RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 BAZ1AQ9NRL2 1556 aaPredicted RBP9.89□□□□□ -0.83
GPNMB-201ENST00000258733 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.89□□□□□ -0.83
GPNMB-201ENST00000258733 GOLIM4O00461 696 aa9.88□□□□□ -0.83
GPNMB-201ENST00000258733 LMOD3Q0VAK6 560 aa9.88□□□□□ -0.83
GPNMB-201ENST00000258733 ZBTB9Q96C00 473 aa9.88□□□□□ -0.83
GPNMB-201ENST00000258733 FAM13BQ9NYF5 915 aa9.88□□□□□ -0.83
GPNMB-201ENST00000258733 MAP2K1Q02750 393 aaPredicted RBP9.88□□□□□ -0.83
GPNMB-201ENST00000258733 NBPF9Q3BBW0 867 aa9.88□□□□□ -0.83
GPNMB-201ENST00000258733 KIAA1211Q6ZU35 1233 aa9.87□□□□□ -0.83
GPNMB-201ENST00000258733 RIPK4P57078 832 aa9.86□□□□□ -0.83
GPNMB-201ENST00000258733 OTUD6BQ8N6M0 293 aa9.86□□□□□ -0.83
GPNMB-201ENST00000258733 STK26Q9P289 416 aa9.86□□□□□ -0.83
GPNMB-201ENST00000258733 LOC102724159A0A0B4J2E5 919 aa9.86□□□□□ -0.83
GPNMB-201ENST00000258733 PWP2Q15269 919 aaKnown RBP9.86□□□□□ -0.83
GPNMB-201ENST00000258733 ZBTB7CA1YPR0 619 aa9.85□□□□□ -0.83
GPNMB-201ENST00000258733 RNF217Q8TC41 542 aa9.85□□□□□ -0.83
GPNMB-201ENST00000258733 TMC1Q8TDI8 760 aa9.85□□□□□ -0.83
GPNMB-201ENST00000258733 SATB1Q01826 763 aa9.85□□□□□ -0.83
GPNMB-201ENST00000258733 SGSM3Q96HU1 749 aa9.85□□□□□ -0.83
GPNMB-201ENST00000258733 HSP90AB4PQ58FF6 505 aa9.84□□□□□ -0.83
GPNMB-201ENST00000258733 CASC1Q6TDU7 716 aa9.84□□□□□ -0.83
GPNMB-201ENST00000258733 ARID4AP29374 1257 aaPredicted RBP9.84□□□□□ -0.83
GPNMB-201ENST00000258733 TERF1P54274 439 aa9.83□□□□□ -0.84
GPNMB-201ENST00000258733 ZBTB12Q9Y330 459 aaPredicted RBP9.83□□□□□ -0.84
GPNMB-201ENST00000258733 CCDC94Q9BW85 323 aaPredicted RBP9.83□□□□□ -0.84
GPNMB-201ENST00000258733 TERF2IPQ9NYB0 399 aa9.83□□□□□ -0.84
GPNMB-201ENST00000258733 ZNF513Q8N8E2 541 aaPredicted RBP9.82□□□□□ -0.84
GPNMB-201ENST00000258733 RAI14Q9P0K7 980 aa9.82□□□□□ -0.84
GPNMB-201ENST00000258733 ESPNB1AK53 854 aa9.81□□□□□ -0.84
GPNMB-201ENST00000258733 CCDC96Q2M329 555 aa9.81□□□□□ -0.84
GPNMB-201ENST00000258733 FOXD4L6Q3SYB3 417 aaPredicted RBP9.81□□□□□ -0.84
GPNMB-201ENST00000258733 FOXD4L3Q6VB84 417 aaPredicted RBP9.81□□□□□ -0.84
GPNMB-201ENST00000258733 NBPF10Q6P3W6 841 aaKnown RBP9.81□□□□□ -0.84
GPNMB-201ENST00000258733 CEP83Q9Y592 693 aa9.81□□□□□ -0.84
GPNMB-201ENST00000258733 MROH2BQ7Z745 1585 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 KCNJ4P48050 445 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 B4GALNT3Q6L9W6 998 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 RINLQ6ZS11 566 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 CT47A1Q5JQC4 288 aaPredicted RBP9.8□□□□□ -0.84
GPNMB-201ENST00000258733 NBPF6Q5VWK0 638 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 NBPF5PQ86XG9 351 aaPredicted RBP9.8□□□□□ -0.84
GPNMB-201ENST00000258733 NBPF4Q96M43 638 aa9.8□□□□□ -0.84
GPNMB-201ENST00000258733 NCAPD3P42695 1498 aa9.79□□□□□ -0.84
GPNMB-201ENST00000258733 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.79□□□□□ -0.84
GPNMB-201ENST00000258733 SSR1P43307 286 aaKnown RBP9.79□□□□□ -0.84
GPNMB-201ENST00000258733 MLECQ14165 292 aa9.79□□□□□ -0.84
GPNMB-201ENST00000258733 ARMCX6Q7L4S7 300 aa9.79□□□□□ -0.84
GPNMB-201ENST00000258733 TSHZ1Q6ZSZ6 1077 aa9.79□□□□□ -0.84
GPNMB-201ENST00000258733 TRIM6-TRIM34B2RNG4 842 aa9.78□□□□□ -0.84
GPNMB-201ENST00000258733 TRIM34Q9BYJ4 488 aa9.78□□□□□ -0.84
GPNMB-201ENST00000258733 TRIM52Q96A61 297 aa9.78□□□□□ -0.84
GPNMB-201ENST00000258733 RIMBP3CA6NJZ7 1639 aa9.77□□□□□ -0.84
GPNMB-201ENST00000258733 RIMBP3BA6NNM3 1639 aa9.77□□□□□ -0.84
GPNMB-201ENST00000258733 RIMBP3Q9UFD9 1639 aa9.77□□□□□ -0.84
GPNMB-201ENST00000258733 WIZO95785 1651 aa9.77□□□□□ -0.84
GPNMB-201ENST00000258733 EXOC8Q8IYI6 725 aa9.76□□□□□ -0.85
GPNMB-201ENST00000258733 DNAJC14Q6Y2X3 702 aaPredicted RBP9.75□□□□□ -0.85
GPNMB-201ENST00000258733 SIRT1Q96EB6 747 aa9.75□□□□□ -0.85
GPNMB-201ENST00000258733 BORCS6Q96GS4 357 aa9.75□□□□□ -0.85
GPNMB-201ENST00000258733 MYCBPQ99417 103 aaPredicted RBP9.75□□□□□ -0.85
GPNMB-201ENST00000258733 EFCC1Q9HA90 598 aa9.75□□□□□ -0.85
GPNMB-201ENST00000258733 TOP2AP11388 1531 aaKnown RBP9.75□□□□□ -0.85
GPNMB-201ENST00000258733 CCDC172P0C7W6 258 aa9.75□□□□□ -0.85
GPNMB-201ENST00000258733 CAPN2P17655 700 aa9.75□□□□□ -0.85
GPNMB-201ENST00000258733 FRAT2O75474 233 aaPredicted RBP9.74□□□□□ -0.85
GPNMB-201ENST00000258733 RBM25P49756 843 aaKnown RBP9.74□□□□□ -0.85
GPNMB-201ENST00000258733 LAMC3Q9Y6N6 1575 aa9.74□□□□□ -0.85
GPNMB-201ENST00000258733 POLD1P28340 1107 aa9.74□□□□□ -0.85
GPNMB-201ENST00000258733 ZKSCAN8Q15776 578 aaPredicted RBP9.74□□□□□ -0.85
GPNMB-201ENST00000258733 TSPYL1Q9H0U9 437 aa9.74□□□□□ -0.85
GPNMB-201ENST00000258733 ERBB4Q15303 1308 aa9.74□□□□□ -0.85
GPNMB-201ENST00000258733 BRPF1P55201 1214 aaPredicted RBP9.73□□□□□ -0.85
GPNMB-201ENST00000258733 XRCC6P12956 609 aaKnown RBP eCLIP9.73□□□□□ -0.85
GPNMB-201ENST00000258733 RAD21O60216 631 aa9.73□□□□□ -0.85
GPNMB-201ENST00000258733 BSDC1Q9NW68 430 aaPredicted RBP9.73□□□□□ -0.85
GPNMB-201ENST00000258733 CALR3Q96L12 384 aaKnown RBP9.72□□□□□ -0.85
GPNMB-201ENST00000258733 MRVI1Q9Y6F6 885 aa9.72□□□□□ -0.85
GPNMB-201ENST00000258733 OFD1O75665 1012 aa9.72□□□□□ -0.85
GPNMB-201ENST00000258733 CT47B1P0C2W7 299 aaPredicted RBP9.72□□□□□ -0.85
GPNMB-201ENST00000258733 FOXD4L5Q5VV16 416 aaPredicted RBP9.72□□□□□ -0.85
GPNMB-201ENST00000258733 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.72□□□□□ -0.85
GPNMB-201ENST00000258733 FOXD4L4Q8WXT5 416 aaPredicted RBP9.72□□□□□ -0.85
GPNMB-201ENST00000258733 SMC4Q9NTJ3 1288 aa9.71□□□□□ -0.85
GPNMB-201ENST00000258733 SMARCA4P51532 1647 aa9.71□□□□□ -0.85
GPNMB-201ENST00000258733 NCAPGQ9BPX3 1015 aa9.71□□□□□ -0.86
GPNMB-201ENST00000258733 HMGXB3Q12766 1538 aa9.71□□□□□ -0.86
GPNMB-201ENST00000258733 DYNC1I1O14576 645 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 MTA1Q13330 715 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 MTMR7Q9Y216 660 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 OSCARQ8IYS5 282 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 RBM28Q9NW13 759 aaKnown RBP9.7□□□□□ -0.86
GPNMB-201ENST00000258733 POGKQ9P215 609 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 PEG3Q9GZU2 1588 aa9.7□□□□□ -0.86
GPNMB-201ENST00000258733 TULP2O00295 520 aa9.69□□□□□ -0.86
GPNMB-201ENST00000258733 EEA1Q15075 1411 aa9.69□□□□□ -0.86
GPNMB-201ENST00000258733 CBX1P83916 185 aa9.69□□□□□ -0.86
GPNMB-201ENST00000258733 SPTY2D1Q68D10 685 aaPredicted RBP9.69□□□□□ -0.86
GPNMB-201ENST00000258733 ANKRD23Q86SG2 305 aa9.69□□□□□ -0.86
GPNMB-201ENST00000258733 TIGD1Q96MW7 591 aa9.69□□□□□ -0.86
GPNMB-201ENST00000258733 IPO8O15397 1037 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms