RNA–Protein interactions for RNA: ENST00000229330.8

HCFC2-201, Transcript of host cell factor C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HCFC2, Length 5,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-201ENST00000229330 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
HCFC2-201ENST00000229330 CLUAP1Q96AJ1 413 aa17.24■□□□□ 0.35
HCFC2-201ENST00000229330 OS9Q13438 667 aaPredicted RBP17.23■□□□□ 0.35
HCFC2-201ENST00000229330 GAPVD1Q14C86 1478 aa17.22■□□□□ 0.35
HCFC2-201ENST00000229330 CCDC146Q8IYE0 955 aa17.21■□□□□ 0.35
HCFC2-201ENST00000229330 APBB1O00213 710 aa17.21■□□□□ 0.35
HCFC2-201ENST00000229330 CSPP1Q1MSJ5 1256 aa17.21■□□□□ 0.35
HCFC2-201ENST00000229330 SMC4Q9NTJ3 1288 aa17.2■□□□□ 0.34
HCFC2-201ENST00000229330 MRE11P49959 708 aa17.2■□□□□ 0.34
HCFC2-201ENST00000229330 TRHP20396 242 aaPredicted RBP17.19■□□□□ 0.34
HCFC2-201ENST00000229330 CGNL1Q0VF96 1302 aa17.19■□□□□ 0.34
HCFC2-201ENST00000229330 RSPH4AQ5TD94 716 aa17.19■□□□□ 0.34
HCFC2-201ENST00000229330 ST18O60284 1047 aa17.18■□□□□ 0.34
HCFC2-201ENST00000229330 HAP1P54257 671 aaPredicted RBP17.18■□□□□ 0.34
HCFC2-201ENST00000229330 KIF3BO15066 747 aa17.18■□□□□ 0.34
HCFC2-201ENST00000229330 U2AF1L5P0DN76 240 aaPredicted RBP17.18■□□□□ 0.34
HCFC2-201ENST00000229330 U2AF1Q01081 240 aaKnown RBP eCLIP17.18■□□□□ 0.34
HCFC2-201ENST00000229330 SAFB2Q14151 953 aaKnown RBP eCLIP17.18■□□□□ 0.34
HCFC2-201ENST00000229330 MAP7D2Q96T17 732 aa17.18■□□□□ 0.34
HCFC2-201ENST00000229330 NAP1L2Q9ULW6 460 aaPredicted RBP17.17■□□□□ 0.34
HCFC2-201ENST00000229330 TPM2P07951 284 aa17.17■□□□□ 0.34
HCFC2-201ENST00000229330 SRPK2P78362 688 aaKnown RBP17.17■□□□□ 0.34
HCFC2-201ENST00000229330 ZNF771Q7L3S4 317 aaPredicted RBP17.17■□□□□ 0.34
HCFC2-201ENST00000229330 A0A0G2JS52 829 aa17.16■□□□□ 0.34
HCFC2-201ENST00000229330 FRAT2O75474 233 aaPredicted RBP17.16■□□□□ 0.34
HCFC2-201ENST00000229330 KIAA1211Q6ZU35 1233 aa17.16■□□□□ 0.34
HCFC2-201ENST00000229330 CNTLNQ9NXG0 1405 aa17.16■□□□□ 0.34
HCFC2-201ENST00000229330 HDGFP51858 240 aaKnown RBP17.16■□□□□ 0.34
HCFC2-201ENST00000229330 SPAG9O60271 1321 aaKnown RBP17.16■□□□□ 0.34
HCFC2-201ENST00000229330 HTATSF1O43719 755 aaKnown RBP17.14■□□□□ 0.34
HCFC2-201ENST00000229330 PTPRGP23470 1445 aa17.14■□□□□ 0.33
HCFC2-201ENST00000229330 MTERF4Q7Z6M4 381 aaKnown RBP17.14■□□□□ 0.33
HCFC2-201ENST00000229330 CCDC7Q96M83 1385 aa17.13■□□□□ 0.33
HCFC2-201ENST00000229330 STK26Q9P289 416 aa17.13■□□□□ 0.33
HCFC2-201ENST00000229330 TAOK2Q9UL54 1235 aa17.13■□□□□ 0.33
HCFC2-201ENST00000229330 E9PSI1 815 aa17.13■□□□□ 0.33
HCFC2-201ENST00000229330 COG6Q9Y2V7 657 aa17.12■□□□□ 0.33
HCFC2-201ENST00000229330 ST20-MTHFSA0A0A6YYL1 179 aa17.12■□□□□ 0.33
HCFC2-201ENST00000229330 LMOD2Q6P5Q4 547 aa17.12■□□□□ 0.33
HCFC2-201ENST00000229330 FOXD4L5Q5VV16 416 aaPredicted RBP17.12■□□□□ 0.33
HCFC2-201ENST00000229330 FOXD4L4Q8WXT5 416 aaPredicted RBP17.12■□□□□ 0.33
HCFC2-201ENST00000229330 BACH2Q9BYV9 841 aa17.11■□□□□ 0.33
HCFC2-201ENST00000229330 R3HCC1Q9Y3T6 440 aaKnown RBP17.1■□□□□ 0.33
HCFC2-201ENST00000229330 USP47Q96K76 1375 aa17.1■□□□□ 0.33
HCFC2-201ENST00000229330 CFTRP13569 1480 aa17.09■□□□□ 0.33
HCFC2-201ENST00000229330 NOL8Q76FK4 1167 aaKnown RBP17.08■□□□□ 0.33
HCFC2-201ENST00000229330 A0A0U1RQG5 324 aaPredicted RBP17.08■□□□□ 0.33
HCFC2-201ENST00000229330 PANK3Q9H999 370 aa17.08■□□□□ 0.33
HCFC2-201ENST00000229330 TRAK2O60296 914 aa17.08■□□□□ 0.32
HCFC2-201ENST00000229330 RRP9O43818 475 aaKnown RBP17.08■□□□□ 0.32
HCFC2-201ENST00000229330 TPM4P67936 248 aa17.08■□□□□ 0.32
HCFC2-201ENST00000229330 AQRO60306 1485 aaKnown RBP eCLIP17.08■□□□□ 0.32
HCFC2-201ENST00000229330 KIF21BO75037 1637 aa17.07■□□□□ 0.32
HCFC2-201ENST00000229330 WASHC2AQ641Q2 1341 aa17.07■□□□□ 0.32
HCFC2-201ENST00000229330 KIF7Q2M1P5 1343 aa17.07■□□□□ 0.32
HCFC2-201ENST00000229330 KIF16BQ96L93 1317 aa17.07■□□□□ 0.32
HCFC2-201ENST00000229330 NASPP49321 788 aaPredicted RBP17.06■□□□□ 0.32
HCFC2-201ENST00000229330 GOLGA6L1Q8N7Z2 621 aa17.06■□□□□ 0.32
HCFC2-201ENST00000229330 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
HCFC2-201ENST00000229330 ZKSCAN2Q63HK3 967 aa17.05■□□□□ 0.32
HCFC2-201ENST00000229330 BCL2L13Q9BXK5 485 aa17.04■□□□□ 0.32
HCFC2-201ENST00000229330 C22orf23Q9BZE7 217 aa17.04■□□□□ 0.32
HCFC2-201ENST00000229330 HMMRO75330 724 aa17.04■□□□□ 0.32
HCFC2-201ENST00000229330 WASHC2CQ9Y4E1 1318 aa17.04■□□□□ 0.32
HCFC2-201ENST00000229330 TRIM6-TRIM34B2RNG4 842 aa17.03■□□□□ 0.32
HCFC2-201ENST00000229330 AKNAQ7Z591 1439 aa17.03■□□□□ 0.32
HCFC2-201ENST00000229330 ANKRD45Q5TZF3 282 aa17.03■□□□□ 0.32
HCFC2-201ENST00000229330 PODXL2Q9NZ53 605 aa17.03■□□□□ 0.32
HCFC2-201ENST00000229330 EIF3AQ14152 1382 aaKnown RBP17.03■□□□□ 0.32
HCFC2-201ENST00000229330 SOX12O15370 315 aa17.03■□□□□ 0.32
HCFC2-201ENST00000229330 UBE2Q2Q8WVN8 375 aa17.02■□□□□ 0.32
HCFC2-201ENST00000229330 HDGFL2Q7Z4V5 671 aaPredicted RBP17.01■□□□□ 0.31
HCFC2-201ENST00000229330 RRP7AQ9Y3A4 280 aaKnown RBP17.01■□□□□ 0.31
HCFC2-201ENST00000229330 NUCB2P80303 420 aa17.01■□□□□ 0.31
HCFC2-201ENST00000229330 CCDC39Q9UFE4 941 aa17.01■□□□□ 0.31
HCFC2-201ENST00000229330 APAF1O14727 1248 aa17■□□□□ 0.31
HCFC2-201ENST00000229330 ATP6V1DQ9Y5K8 247 aa17■□□□□ 0.31
HCFC2-201ENST00000229330 NESP48681 1621 aa17■□□□□ 0.31
HCFC2-201ENST00000229330 RBM10P98175 930 aaKnown RBP16.99■□□□□ 0.31
HCFC2-201ENST00000229330 CCDC173Q0VFZ6 552 aa16.99■□□□□ 0.31
HCFC2-201ENST00000229330 FGD6Q6ZV73 1430 aa16.99■□□□□ 0.31
HCFC2-201ENST00000229330 SMG6Q86US8 1419 aaKnown RBP16.99■□□□□ 0.31
HCFC2-201ENST00000229330 CCDC144AA2RUR9 1427 aa16.99■□□□□ 0.31
HCFC2-201ENST00000229330 MCTP1Q6DN14 999 aa16.98■□□□□ 0.31
HCFC2-201ENST00000229330 GNL2Q13823 731 aaKnown RBP16.98■□□□□ 0.31
HCFC2-201ENST00000229330 NGEFQ8N5V2 710 aa16.98■□□□□ 0.31
HCFC2-201ENST00000229330 ERICH3Q5RHP9 1530 aa16.98■□□□□ 0.31
HCFC2-201ENST00000229330 BRD4O60885 1362 aaPredicted RBP16.98■□□□□ 0.31
HCFC2-201ENST00000229330 FOXD4L6Q3SYB3 417 aaPredicted RBP16.98■□□□□ 0.31
HCFC2-201ENST00000229330 FOXD4L3Q6VB84 417 aaPredicted RBP16.98■□□□□ 0.31
HCFC2-201ENST00000229330 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 NUTM2DQ5VT03 806 aaPredicted RBP16.97■□□□□ 0.31
HCFC2-201ENST00000229330 ISY1Q9ULR0 285 aaKnown RBP16.97■□□□□ 0.31
HCFC2-201ENST00000229330 LRRC9Q6ZRR7 1453 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 MYOM3Q5VTT5 1437 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 ZNF592Q92610 1267 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 AAMPQ13685 434 aa16.97■□□□□ 0.31
HCFC2-201ENST00000229330 RTF1Q92541 710 aaKnown RBP16.97■□□□□ 0.31
HCFC2-201ENST00000229330 DDX19BQ9UMR2 479 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms