RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FGD1P98174 961 aa18.85■□□□□ 0.61
PTPRA-201ENST00000216877 UPF2Q9HAU5 1272 aaKnown RBP18.82■□□□□ 0.6
PTPRA-201ENST00000216877 CASKIN1Q8WXD9 1431 aa18.82■□□□□ 0.6
PTPRA-201ENST00000216877 C8orf34Q49A92 452 aa18.81■□□□□ 0.6
PTPRA-201ENST00000216877 NBPF8Q3BBV2 869 aa18.81■□□□□ 0.6
PTPRA-201ENST00000216877 LRRC9Q6ZRR7 1453 aa18.81■□□□□ 0.6
PTPRA-201ENST00000216877 CENPQQ7L2Z9 268 aaPredicted RBP18.79■□□□□ 0.6
PTPRA-201ENST00000216877 CCDC18Q5T9S5 1454 aa18.79■□□□□ 0.6
PTPRA-201ENST00000216877 TPM2P07951 284 aa18.78■□□□□ 0.6
PTPRA-201ENST00000216877 KTN1Q86UP2 1357 aaKnown RBP18.78■□□□□ 0.6
PTPRA-201ENST00000216877 CLASP1Q7Z460 1538 aa18.78■□□□□ 0.6
PTPRA-201ENST00000216877 BCL11BQ9C0K0 894 aaPredicted RBP18.77■□□□□ 0.6
PTPRA-201ENST00000216877 ANP32BQ92688 251 aaKnown RBP18.77■□□□□ 0.59
PTPRA-201ENST00000216877 TRAK2O60296 914 aa18.76■□□□□ 0.59
PTPRA-201ENST00000216877 SYNJ2O15056 1496 aa18.76■□□□□ 0.59
PTPRA-201ENST00000216877 MRE11P49959 708 aa18.76■□□□□ 0.59
PTPRA-201ENST00000216877 R3HCC1Q9Y3T6 440 aaKnown RBP18.75■□□□□ 0.59
PTPRA-201ENST00000216877 BBXQ8WY36 941 aaPredicted RBP18.74■□□□□ 0.59
PTPRA-201ENST00000216877 MSNP26038 577 aaKnown RBP18.74■□□□□ 0.59
PTPRA-201ENST00000216877 CALD1Q05682 793 aaKnown RBP18.74■□□□□ 0.59
PTPRA-201ENST00000216877 GRPEL1Q9HAV7 217 aa18.74■□□□□ 0.59
PTPRA-201ENST00000216877 CANXP27824 592 aaKnown RBP18.73■□□□□ 0.59
PTPRA-201ENST00000216877 ABCA8O94911 1581 aa18.73■□□□□ 0.59
PTPRA-201ENST00000216877 KIAA0586Q9BVV6 1533 aa18.72■□□□□ 0.59
PTPRA-201ENST00000216877 ERBB4Q15303 1308 aa18.72■□□□□ 0.59
PTPRA-201ENST00000216877 SEC24BO95487 1268 aa18.71■□□□□ 0.59
PTPRA-201ENST00000216877 MCM4P33991 863 aa18.71■□□□□ 0.59
PTPRA-201ENST00000216877 MPHOSPH9Q99550 1183 aa18.71■□□□□ 0.59
PTPRA-201ENST00000216877 NCOA1Q15788 1441 aa18.71■□□□□ 0.59
PTPRA-201ENST00000216877 UACAQ9BZF9 1416 aa18.71■□□□□ 0.59
PTPRA-201ENST00000216877 CC2D1BQ5T0F9 858 aaKnown RBP18.71■□□□□ 0.59
PTPRA-201ENST00000216877 FHOD3Q2V2M9 1422 aa18.7■□□□□ 0.58
PTPRA-201ENST00000216877 KDM2AQ9Y2K7 1162 aa18.7■□□□□ 0.58
PTPRA-201ENST00000216877 ERCC6Q03468 1493 aa18.7■□□□□ 0.58
PTPRA-201ENST00000216877 RAPGEF6Q8TEU7 1601 aa18.69■□□□□ 0.58
PTPRA-201ENST00000216877 MTUS2Q5JR59 1369 aa18.69■□□□□ 0.58
PTPRA-201ENST00000216877 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.68■□□□□ 0.58
PTPRA-201ENST00000216877 CROCC2H7BZ55 1655 aa18.68■□□□□ 0.58
PTPRA-201ENST00000216877 HECW1Q76N89 1606 aa18.67■□□□□ 0.58
PTPRA-201ENST00000216877 TNNT2P45379 298 aaPredicted RBP18.67■□□□□ 0.58
PTPRA-201ENST00000216877 PDE3BQ13370 1112 aa18.67■□□□□ 0.58
PTPRA-201ENST00000216877 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
PTPRA-201ENST00000216877 PRDM4Q9UKN5 801 aa18.66■□□□□ 0.58
PTPRA-201ENST00000216877 NCOA2Q15596 1464 aa18.65■□□□□ 0.58
PTPRA-201ENST00000216877 NCLP19338 710 aaKnown RBP18.64■□□□□ 0.57
PTPRA-201ENST00000216877 NUP153P49790 1475 aaKnown RBP18.63■□□□□ 0.57
PTPRA-201ENST00000216877 FOXD4L1Q9NU39 408 aa18.63■□□□□ 0.57
PTPRA-201ENST00000216877 GCC2Q8IWJ2 1684 aa18.63■□□□□ 0.57
PTPRA-201ENST00000216877 MAPK8IP2Q13387 824 aaPredicted RBP18.63■□□□□ 0.57
PTPRA-201ENST00000216877 FMN1Q68DA7 1419 aa18.63■□□□□ 0.57
PTPRA-201ENST00000216877 SUPT6HQ7KZ85 1726 aaKnown RBP18.62■□□□□ 0.57
PTPRA-201ENST00000216877 MYBBP1AQ9BQG0 1328 aaKnown RBP18.62■□□□□ 0.57
PTPRA-201ENST00000216877 TBC1D2Q9BYX2 928 aa18.61■□□□□ 0.57
PTPRA-201ENST00000216877 CHMP4BQ9H444 224 aaKnown RBP18.61■□□□□ 0.57
PTPRA-201ENST00000216877 TCOF1Q13428 1488 aaKnown RBP18.61■□□□□ 0.57
PTPRA-201ENST00000216877 CDC42BPAQ5VT25 1732 aa18.61■□□□□ 0.57
PTPRA-201ENST00000216877 CARD11Q9BXL7 1154 aa18.61■□□□□ 0.57
PTPRA-201ENST00000216877 ERCC6L2Q5T890 1561 aa18.6■□□□□ 0.57
PTPRA-201ENST00000216877 PDIA4P13667 645 aaKnown RBP18.59■□□□□ 0.57
PTPRA-201ENST00000216877 FSD2A1L4K1 749 aa18.59■□□□□ 0.57
PTPRA-201ENST00000216877 MFAP1P55081 439 aaKnown RBP18.58■□□□□ 0.57
PTPRA-201ENST00000216877 DNTTIP2Q5QJE6 756 aaKnown RBP18.58■□□□□ 0.56
PTPRA-201ENST00000216877 AEBP2Q6ZN18 517 aaPredicted RBP18.58■□□□□ 0.56
PTPRA-201ENST00000216877 UQCRHLA0A096LP55 91 aa18.58■□□□□ 0.56
PTPRA-201ENST00000216877 UQCRHP07919 91 aa18.58■□□□□ 0.56
PTPRA-201ENST00000216877 EHBP1L1Q8N3D4 1523 aa18.58■□□□□ 0.56
PTPRA-201ENST00000216877 NLRP13Q86W25 1043 aa18.57■□□□□ 0.56
PTPRA-201ENST00000216877 EPRSP07814 1512 aaKnown RBP18.57■□□□□ 0.56
PTPRA-201ENST00000216877 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.57■□□□□ 0.56
PTPRA-201ENST00000216877 CHMP5Q9NZZ3 219 aa18.57■□□□□ 0.56
PTPRA-201ENST00000216877 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.56■□□□□ 0.56
PTPRA-201ENST00000216877 DENND4BO75064 1496 aaPredicted RBP18.56■□□□□ 0.56
PTPRA-201ENST00000216877 RALBP1Q15311 655 aa18.56■□□□□ 0.56
PTPRA-201ENST00000216877 XPCQ01831 940 aaPredicted RBP18.55■□□□□ 0.56
PTPRA-201ENST00000216877 KDM2BQ8NHM5 1336 aa18.55■□□□□ 0.56
PTPRA-201ENST00000216877 DHX29Q7Z478 1369 aaKnown RBP18.55■□□□□ 0.56
PTPRA-201ENST00000216877 USP47Q96K76 1375 aa18.54■□□□□ 0.56
PTPRA-201ENST00000216877 PLCD3Q8N3E9 789 aa18.54■□□□□ 0.56
PTPRA-201ENST00000216877 KIF14Q15058 1648 aa18.54■□□□□ 0.56
PTPRA-201ENST00000216877 KDM6BO15054 1643 aa18.53■□□□□ 0.56
PTPRA-201ENST00000216877 VGLL3A8MV65 326 aa18.53■□□□□ 0.56
PTPRA-201ENST00000216877 WDR43Q15061 677 aaKnown RBP eCLIP18.53■□□□□ 0.56
PTPRA-201ENST00000216877 MAP7D2Q96T17 732 aa18.53■□□□□ 0.56
PTPRA-201ENST00000216877 PTPRKQ15262 1439 aa18.53■□□□□ 0.56
PTPRA-201ENST00000216877 ST20-MTHFSA0A0A6YYL1 179 aa18.52■□□□□ 0.56
PTPRA-201ENST00000216877 RIPK4P57078 832 aa18.52■□□□□ 0.56
PTPRA-201ENST00000216877 KIF15Q9NS87 1388 aa18.52■□□□□ 0.56
PTPRA-201ENST00000216877 NASPP49321 788 aaPredicted RBP18.52■□□□□ 0.56
PTPRA-201ENST00000216877 HSCBQ8IWL3 235 aa18.52■□□□□ 0.56
PTPRA-201ENST00000216877 NAP1L2Q9ULW6 460 aaPredicted RBP18.52■□□□□ 0.56
PTPRA-201ENST00000216877 CDK13Q14004 1512 aaKnown RBP18.52■□□□□ 0.55
PTPRA-201ENST00000216877 DDX11L8A8MPP1 907 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 ZSCAN30Q86W11 494 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 CDC42BPBQ9Y5S2 1711 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 IGHDP01880 384 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 GAS2L3Q86XJ1 694 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 CDK11BP21127 795 aaKnown RBP18.51■□□□□ 0.55
PTPRA-201ENST00000216877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.558e-7■■■□□ 18.7
PTPRA-201ENST00000216877 COG6Q9Y2V7 657 aa18.51■□□□□ 0.55
PTPRA-201ENST00000216877 PTPN23Q9H3S7 1636 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms