RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 MIER1Q8N108 512 aa7.47□□□□□ -1.21
VPS13D-201ENST00000011700 SUPT16HQ9Y5B9 1047 aaKnown RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 IPO9Q96P70 1041 aaKnown RBP7.46□□□□□ -1.21
VPS13D-201ENST00000011700 NAP1L2Q9ULW6 460 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-201ENST00000011700 CCDC173Q0VFZ6 552 aa7.46□□□□□ -1.21
VPS13D-201ENST00000011700 LETM1O95202 739 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-201ENST00000011700 AMOTL1Q8IY63 956 aa7.46□□□□□ -1.21
VPS13D-201ENST00000011700 RUFY2Q8WXA3 655 aa7.46□□□□□ -1.22
VPS13D-201ENST00000011700 NINLQ9Y2I6 1382 aa7.46□□□□□ -1.22
VPS13D-201ENST00000011700 CGNL1Q0VF96 1302 aa7.46□□□□□ -1.22
VPS13D-201ENST00000011700 HMGN5P82970 282 aaKnown RBP7.45□□□□□ -1.22
VPS13D-201ENST00000011700 HSP90B2PQ58FF3 399 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 KIF21BO75037 1637 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 PDS5BQ9NTI5 1447 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 CENPQQ7L2Z9 268 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-201ENST00000011700 CCDC191Q8NCU4 936 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 NLRP13Q86W25 1043 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 DIAPH3Q9NSV4 1193 aa7.45□□□□□ -1.22
VPS13D-201ENST00000011700 LUC7LQ9NQ29 371 aaKnown RBP7.44□□□□□ -1.22
VPS13D-201ENST00000011700 NEXNQ0ZGT2 675 aa7.44□□□□□ -1.22
VPS13D-201ENST00000011700 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13D-201ENST00000011700 RNF20Q5VTR2 975 aa7.44□□□□□ -1.22
VPS13D-201ENST00000011700 GOLGA6L7A0A1B0GV03 622 aa7.44□□□□□ -1.22
VPS13D-201ENST00000011700 PIP4K2AP48426 406 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-201ENST00000011700 CCDC7Q96M83 1385 aa7.44□□□□□ -1.22
VPS13D-201ENST00000011700 SALL2Q9Y467 1007 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-201ENST00000011700 RCAN3Q9UKA8 241 aa7.44□□□□□ -1.22
VPS13D-201ENST00000011700 USP8P40818 1118 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 RUFY1Q96T51 708 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 CLSTN1O94985 981 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 NCBP3Q53F19 620 aaKnown RBP7.43□□□□□ -1.22
VPS13D-201ENST00000011700 MCM2P49736 904 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 MORC1Q86VD1 984 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 INCENPQ9NQS7 918 aa7.43□□□□□ -1.22
VPS13D-201ENST00000011700 FRAT1Q92837 279 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-201ENST00000011700 RGS3P49796 1198 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 CHIC2Q9UKJ5 165 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 FEZ1Q99689 392 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 PDCP20941 246 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 IQCEQ6IPM2 695 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 AK9Q5TCS8 1911 aa7.42□□□□□ -1.22
VPS13D-201ENST00000011700 ZKSCAN1P17029 563 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-201ENST00000011700 BECN2A8MW95 431 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 DEKP35659 375 aaKnown RBP7.41□□□□□ -1.22
VPS13D-201ENST00000011700 NUCB2P80303 420 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 ANKRD18AQ8IVF6 992 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 AKAP17AQ02040 695 aaKnown RBP7.41□□□□□ -1.22
VPS13D-201ENST00000011700 RASSF8Q8NHQ8 419 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 TPD52L1Q16890 204 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-201ENST00000011700 ZBED9Q6R2W3 1325 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 MFAP1P55081 439 aaKnown RBP7.41□□□□□ -1.22
VPS13D-201ENST00000011700 MIA2Q96PC5 1412 aa7.41□□□□□ -1.22
VPS13D-201ENST00000011700 EIF4G1Q04637 1599 aaKnown RBP7.41□□□□□ -1.22
VPS13D-201ENST00000011700 GORABQ5T7V8 394 aa7.4□□□□□ -1.22
VPS13D-201ENST00000011700 SMARCA4P51532 1647 aa7.4□□□□□ -1.22
VPS13D-201ENST00000011700 SYNE3Q6ZMZ3 975 aa7.4□□□□□ -1.23
VPS13D-201ENST00000011700 TSPYL1Q9H0U9 437 aa7.4□□□□□ -1.23
VPS13D-201ENST00000011700 HSP90AB4PQ58FF6 505 aa7.4□□□□□ -1.23
VPS13D-201ENST00000011700 RABEP1Q15276 862 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 SF3A1Q15459 793 aaKnown RBP7.39□□□□□ -1.23
VPS13D-201ENST00000011700 CENPJQ9HC77 1338 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-201ENST00000011700 TCEAL9Q9UHQ7 104 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 H3BQV1 296 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 IFFO2Q5TF58 517 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 XBP1P17861 261 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 CCDC144AA2RUR9 1427 aa7.39□□□□□ -1.23
VPS13D-201ENST00000011700 PES1O00541 588 aaKnown RBP7.38□□□□□ -1.23
VPS13D-201ENST00000011700 U2SURPO15042 1029 aaKnown RBP7.38□□□□□ -1.23
VPS13D-201ENST00000011700 TRIM29Q14134 588 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 CNTLNQ9NXG0 1405 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 RRP7BPQ9NSQ0 103 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 E9PSI1 815 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 FAM161AQ3B820 660 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 FANCIQ9NVI1 1328 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 BRMS1Q9HCU9 246 aa7.38□□□□□ -1.23
VPS13D-201ENST00000011700 PLEKHH2Q8IVE3 1493 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 MYO10Q9HD67 2058 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 GSE1Q14687 1217 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 HIP1O00291 1037 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 ERLIN2O94905 339 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 NOL10Q9BSC4 688 aaKnown RBP7.37□□□□□ -1.23
VPS13D-201ENST00000011700 CARMIL1Q5VZK9 1371 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 MBD3O95983 291 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 SRPK2P78362 688 aaKnown RBP7.37□□□□□ -1.23
VPS13D-201ENST00000011700 WASHC2CQ9Y4E1 1318 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 DHX16O60231 1041 aaKnown RBP7.37□□□□□ -1.23
VPS13D-201ENST00000011700 DDX19BQ9UMR2 479 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 KIF21AQ7Z4S6 1674 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 KCNA4P22459 653 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 A0A0G2JS52 829 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 RBM19Q9Y4C8 960 aaKnown RBP7.37□□□□□ -1.23
VPS13D-201ENST00000011700 DNAI2Q9GZS0 605 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 AMER1Q5JTC6 1135 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-201ENST00000011700 ERICH3Q5RHP9 1530 aa7.37□□□□□ -1.23
VPS13D-201ENST00000011700 HMGB3O15347 200 aaKnown RBP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 MYBBP1AQ9BQG0 1328 aaKnown RBP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 PDCL2Q8N4E4 241 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 EFCAB5A4FU69 1503 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 TRIM21P19474 475 aaKnown RBP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 ITPRIPQ8IWB1 547 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms