RNA–Protein interactions for RNA: ENSMUST00000034713.8

Ldlr-201, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,627 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-201ENSMUST00000034713 ErbinQ80TH2 1402 aa12.73□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Tmf1B9EKI3 1091 aa12.73□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Dnai1Q8C0M8 701 aa12.72□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Smg6P61406 1418 aaKnown RBP12.72□□□□□ -0.37
Ldlr-201ENSMUST00000034713 EspnQ9ET47 871 aa12.72□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Fan1Q69ZT1 1020 aa12.71□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Chmp5Q9D7S9 219 aa12.71□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Caskin1Q6P9K8 1431 aa12.71□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Plcb2A3KGF7 1181 aa12.71□□□□□ -0.38
Ldlr-201ENSMUST00000034713 PxdnQ3UQ28 1475 aa12.71□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Zfp644E9QA22 1323 aa12.71□□□□□ -0.38
Ldlr-201ENSMUST00000034713 WizO88286 1684 aaKnown RBP12.7□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Trim26Q99PN3 545 aa12.69□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Atp10dQ8K2X1 1416 aa12.69□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Mapk8ip3Q9ESN9 1337 aa12.69□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Ythdc2B2RR83 1445 aaKnown RBP12.69□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Fancd2Q80V62 1450 aa12.69□□□□□ -0.38
Ldlr-201ENSMUST00000034713 NudcO35685 332 aaKnown RBP12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 PtmaP26350 111 aa12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Cd109Q8R422 1442 aa12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Apbb1Q9QXJ1 710 aa12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Shroom2A2ALU4 1481 aa12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Utp14aQ640M1 767 aaKnown RBP12.68□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Magi3Q9EQJ9 1476 aa12.67□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Slc4a3P16283 1227 aa12.67□□□□□ -0.38
Ldlr-201ENSMUST00000034713 CenpjQ569L8 1344 aa12.67□□□□□ -0.38
Ldlr-201ENSMUST00000034713 KnstrnQ9D9Z1 312 aaKnown RBP12.66□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Abcc5Q9R1X5 1436 aa12.66□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Neurod2Q62414 383 aa12.66□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Pbrm1Q8BSQ9 1634 aaKnown RBP12.66□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Naip2Q9QUK4 1447 aa12.65□□□□□ -0.38
Ldlr-201ENSMUST00000034713 B4galnt3Q6L8S8 986 aa12.65□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Ttll5Q8CHB8 1328 aa12.65□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Gm156Q58A37 223 aa12.65□□□□□ -0.38
Ldlr-201ENSMUST00000034713 Nolc1E9Q5C9 702 aaKnown RBP12.65□□□□□ -0.39
Ldlr-201ENSMUST00000034713 PtmsQ9D0J8 101 aaKnown RBP12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 4933402E13RikQ9D4D2 429 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Rusc2Q80U22 1514 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Dbr1Q923B1 550 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Shq1Q7TMX5 569 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Iqcf3Q9D498 203 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Slx4Q6P1D7 1565 aa12.64□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Ncoa3O09000 1398 aa12.63□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Dapk1Q80YE7 1442 aa12.63□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Gm1043A0A140LJC2 1431 aa12.62□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Usp40Q8BWR4 1235 aa12.62□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Abcc1O35379 1528 aa12.62□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Rapgef6Q5NCJ1 1609 aa12.62□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Rfx7F8VPJ6 1459 aa12.61□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Vsig10D3YX43 558 aa12.61□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Ipo8Q7TMY7 1010 aa12.61□□□□□ -0.39
Ldlr-201ENSMUST00000034713 CatipB9EKE5 520 aa12.6□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Adam1bQ8R534 806 aa12.6□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Gapvd1Q6PAR5 1458 aa12.6□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Dcaf11Q91VU6 549 aa12.6□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Slc4a1apE9PX68 744 aa12.6□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Lrriq1Q0P5X1 1673 aa12.59□□□□□ -0.39
Ldlr-201ENSMUST00000034713 OvosQ3UU35 1456 aa12.59□□□□□ -0.39
Ldlr-201ENSMUST00000034713 Afap1Q80YS6 731 aa12.58□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Unc13aQ4KUS2 1712 aa12.58□□□□□ -0.4
Ldlr-201ENSMUST00000034713 BC005561E9Q5E2 1589 aa12.58□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Dnttip2Q8R2M2 758 aaKnown RBP12.57□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Speer4f1Q9D5Q6 258 aa12.57□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Ecm2Q5FW85 670 aa12.57□□□□□ -0.4
Ldlr-201ENSMUST00000034713 HnrnpuQ8VEK3 800 aaKnown RBP12.57□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Eif4g1Q6NZJ6 1600 aaKnown RBP12.56□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Myom3A2ABU4 1439 aa12.55□□□□□ -0.4
Ldlr-201ENSMUST00000034713 AampJ3QN89 436 aa12.55□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Dhx9O70133 1380 aaKnown RBP12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Sox12Q04890 314 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Znf316Q6PGE4 1016 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Lmod3E9QA62 571 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Casc1Q6TDU8 730 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Znf710Q3U288 666 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Puf60Q3UEB3 564 aaKnown RBP12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Ap3b2Q9JME5 1082 aa12.54□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Erich3F6QRE9 1637 aa12.53□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Pank3Q8R2W9 370 aa12.53□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Gtf3c3Q3TMP1 882 aa12.53□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Wdr7Q920I9 1489 aa12.52□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Arhgef12Q8R4H2 1543 aaKnown RBP12.52□□□□□ -0.4
Ldlr-201ENSMUST00000034713 Birc3O08863 600 aa12.52□□□□□ -0.41
Ldlr-201ENSMUST00000034713 HdgfP51859 237 aaKnown RBP12.52□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Fam184bQ0KK56 942 aa12.52□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Mink1Q9JM52 1308 aa12.51□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Mre11Q61216 706 aa12.51□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Golga2Q921M4 999 aa12.51□□□□□ -0.41
Ldlr-201ENSMUST00000034713 MccE9PWI3 1003 aa12.5□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Prex2Q3LAC4 1598 aa12.5□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Rrp12Q6P5B0 1295 aaKnown RBP12.5□□□□□ -0.41
Ldlr-201ENSMUST00000034713 U2af1Q9D883 239 aaKnown RBP12.5□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Mapkbp1Q6NS57 1503 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Ttc21bQ0HA38 1315 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Gm6268A2A3U9 297 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Peg3Q3URU2 1571 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Q9D9H8 365 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Adamts12Q811B3 1600 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 AI481877A2ALV5 1481 aa12.49□□□□□ -0.41
Ldlr-201ENSMUST00000034713 3425401B19RikD3Z1D3 1412 aa12.48□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Eif4g3Q80XI3 1579 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 24.3 ms