RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CARD18P57730 90 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 RUNX1T1Q06455 604 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PTK2BQ14289 1009 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLC5A9Q2M3M2 681 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SWSAP1Q6NVH7 229 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO18Q8NFZ0 1043 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ANKRD7Q92527 254 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FAM149B1Q96BN6 582 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF597Q96LX8 424 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 DNAJC7Q99615 494 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MMTAG2Q9BU76 263 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NFKBIL1Q9UBC1 381 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ACAD8Q9UKU7 415 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FAM169AQ9Y6X4 670 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SPTAN1Q13813 2472 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FAM47DPA6NHR8 397 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NOL3O60936 208 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LRRN2O75325 713 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FTCDO95954 541 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 RECKO95980 971 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ATXN8OSP0DMR3 200 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PRKCIP41743 596 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NEK4P51957 841 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TUBA4AP68366 448 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLC9A5Q14940 896 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PHC2Q8IXK0 858 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LNX2Q8N448 690 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.82□□□□□ -1.81e-6■■■□□ 16.7
SCN1A-221ENST00000641996 TRIM45Q9H8W5 580 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PARVGQ9HBI0 331 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CASS4Q9NQ75 786 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NUDCQ9Y266 331 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SPTBN2O15020 2390 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ATG7O95352 703 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MT-ND3P03897 115 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CASP2P42575 452 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CACNB3P54284 484 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SCAND1P57086 179 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ATP11AP98196 1134 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KDSRQ06136 332 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SSX2Q16385 188 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC153Q494R4 210 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PLEKHA7Q6IQ23 1121 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC81Q6ZN84 652 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ANKS3Q6ZW76 656 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FAM186BQ8IYM0 893 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NKX2-3Q8TAU0 364 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 DYDC2Q96IM9 177 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MOV10L1Q9BXT6 1211 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ATAD3AQ9NVI7 634 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LAMP5Q9UJQ1 280 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TRAF5O00463 557 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MAN1A2O60476 641 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MT-CO1P00395 513 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 HLA-DRAP01903 254 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CASP5P51878 434 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 IST1P53990 364 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CDC16Q13042 620 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CREB3L3Q68CJ9 461 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO30Q8TB52 745 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 AGAP3Q96P47 875 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MNTQ99583 582 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LY9Q9HBG7 655 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PARP3Q9Y6F1 533 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 IKBKBO14920 756 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CALM1P0DP23 149 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CALM2P0DP24 149 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CALM3P0DP25 149 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PF4V1P10720 104 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ETV5P41161 510 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SCRN1Q12765 414 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 R3HDM1Q15032 1099 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TBCCQ15814 346 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM69Q86WT6 500 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LSM14AQ8ND56 463 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 UBLCP1Q8WVY7 318 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NRBF2Q96F24 287 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ANKRD27Q96NW4 1050 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CORO1BQ9BR76 489 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 EVA1AQ9H8M9 152 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 A8MX80 341 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLC27A2O14975 620 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SDSP20132 328 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 DIO1P49895 249 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PUDPQ08623 228 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 STX1AQ16623 288 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 STRIP1Q5VSL9 837 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KANK2Q63ZY3 851 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NME9Q86XW9 330 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 BCL7CQ8WUZ0 217 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ECT2Q9H8V3 914 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 DNAJC11Q9NVH1 559 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SNX13Q9Y5W8 968 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 H7C0C1 242 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MCF2LO15068 1137 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 XRCC5P13010 732 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TNNI1P19237 187 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CORO7P57737 925 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ROR2Q01974 943 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CNGA2Q16280 664 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms