RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RASEFQ8IZ41 740 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 LRRC43Q8N309 656 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 LRRC71Q8N4P6 559 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 MAP7D2Q96T17 732 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 ADAMTS10Q9H324 1103 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 TSHZ2Q9NRE2 1034 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 FAM86C1Q9NVL1 165 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 SPG21Q9NZD8 308 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 CDH22Q9UJ99 828 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 HOXB8P17481 243 aaPredicted RBP21.96■■□□□ 1.11
CLN3-262ENST00000637699 AVPR2P30518 371 aa21.96■■□□□ 1.11
CLN3-262ENST00000637699 PPM1AP35813 382 aa21.96■■□□□ 1.11
CLN3-262ENST00000637699 C6orf50Q9HD87 102 aa21.96■■□□□ 1.11
CLN3-262ENST00000637699 KMT2EQ8IZD2 1858 aa21.96■■□□□ 1.11
CLN3-262ENST00000637699 EIF4BP23588 611 aaKnown RBP21.95■■□□□ 1.1
CLN3-262ENST00000637699 TMOD1P28289 359 aa21.95■■□□□ 1.1
CLN3-262ENST00000637699 REXO1Q8N1G1 1221 aaKnown RBP21.95■■□□□ 1.1
CLN3-262ENST00000637699 FAM167AQ96KS9 214 aa21.95■■□□□ 1.1
CLN3-262ENST00000637699 ZMYND12Q9H0C1 365 aa21.95■■□□□ 1.1
CLN3-262ENST00000637699 PDGFBP01127 241 aaPredicted RBP21.94■■□□□ 1.1
CLN3-262ENST00000637699 FGFR4P22455 802 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 CA8P35219 290 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 FGD1P98174 961 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 CLLU1OSQ5K130 101 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 MCTP2Q6DN12 878 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 LINC01465Q8N7H1 131 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 MRPL43Q8N983 215 aaKnown RBP21.94■■□□□ 1.1
CLN3-262ENST00000637699 CASP10Q92851 521 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 SCLT1Q96NL6 688 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 NRBP2Q9NSY0 501 aa21.94■■□□□ 1.1
CLN3-262ENST00000637699 ZFHX2Q9C0A1 2572 aaPredicted RBP21.94■■□□□ 1.1
CLN3-262ENST00000637699 ESYT2A0FGR8 921 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 ST18O60284 1047 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 CACNA1HO95180 2353 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 METAP2P50579 478 aaKnown RBP eCLIP21.93■■□□□ 1.1
CLN3-262ENST00000637699 SMC1AQ14683 1233 aaKnown RBP21.93■■□□□ 1.1
CLN3-262ENST00000637699 TPRNQ4KMQ1 711 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 KREMEN2Q8NCW0 462 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 HELQQ8TDG4 1101 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 CCDC12Q8WUD4 166 aaPredicted RBP21.93■■□□□ 1.1
CLN3-262ENST00000637699 ATOH1Q92858 354 aaPredicted RBP21.93■■□□□ 1.1
CLN3-262ENST00000637699 NR2E1Q9Y466 385 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 HCFC2Q9Y5Z7 792 aa21.93■■□□□ 1.1
CLN3-262ENST00000637699 C2orf71A6NGG8 1288 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 WDR64B1ANS9 1081 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 NT5C1B-RDH14C9J2C7 533 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 ZNF862O60290 1169 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 OATP04181 439 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 CPA1P15085 419 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 GPC3P51654 580 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 RCAN1P53805 252 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 TSGA10IPQ3SY00 556 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 CES5AQ6NT32 575 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 SLC39A11Q8N1S5 342 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 RIPOR3Q96MK2 946 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 POMKQ9H5K3 350 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 DISC1Q9NRI5 854 aa21.92■■□□□ 1.1
CLN3-262ENST00000637699 A0A0U1RQF3 1178 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 CCDC196A0A1B0GTZ2 297 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 CSDE1O75534 798 aaKnown RBP21.91■■□□□ 1.1
CLN3-262ENST00000637699 DARSP14868 501 aaKnown RBP21.91■■□□□ 1.1
CLN3-262ENST00000637699 GNA11P29992 359 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 CIITAP33076 1130 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 PRKCEQ02156 737 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 KRT32Q14532 448 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 ZNF710Q8N1W2 664 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 NLRP7Q8WX94 980 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 LENG9Q96B70 501 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 ADAM7Q9H2U9 754 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 CFAP54Q96N23 3096 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 MYO10Q9HD67 2058 aa21.91■■□□□ 1.1
CLN3-262ENST00000637699 C2CD4DB7Z1M9 353 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 H0Y858 1186 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 CHMP2AO43633 222 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 GFRA3O60609 400 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 CLASP2O75122 1294 aaKnown RBP21.9■■□□□ 1.1
CLN3-262ENST00000637699 CXCL14O95715 111 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 EOMESO95936 686 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 WEE2P0C1S8 567 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 ALDH7A1P49419 539 aaKnown RBP21.9■■□□□ 1.1
CLN3-262ENST00000637699 BCAR1P56945 870 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 UGCGQ16739 394 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 ZNF598Q86UK7 904 aaKnown RBP21.9■■□□□ 1.1
CLN3-262ENST00000637699 SKAP1Q86WV1 359 aa21.9■■□□□ 1.1
CLN3-262ENST00000637699 WDR81Q562E7 1941 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 MSH4O15457 936 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 PRPF3O43395 683 aaKnown RBP21.89■■□□□ 1.09
CLN3-262ENST00000637699 BRD1O95696 1058 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 HMGB1P09429 215 aaKnown RBP21.89■■□□□ 1.09
CLN3-262ENST00000637699 ITIH3Q06033 890 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 TBC1D8BQ0IIM8 1120 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 MTMR3Q13615 1198 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 BMP2KLQ5H9B9 411 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 Q6ZUG5 572 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 C12orf76Q8N812 135 aaPredicted RBP21.89■■□□□ 1.09
CLN3-262ENST00000637699 PHKBQ93100 1093 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 CCDC136Q96JN2 1154 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 NECTIN4Q96NY8 510 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 IRF2BPLQ9H1B7 796 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 DACT1Q9NYF0 836 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms