RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZC3H18Q86VM9 953 aaKnown RBP11.89□□□□□ -0.51
CLN3-244ENST00000636147 AGAP11Q8TF27 550 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 RFFLQ8WZ73 363 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 C18orf8Q96DM3 657 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 PABPC3Q9H361 631 aaKnown RBP11.89□□□□□ -0.51
CLN3-244ENST00000636147 USH1CQ9Y6N9 552 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 KYNUQ16719 465 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 KNOP1Q1ED39 458 aaKnown RBP11.89□□□□□ -0.51
CLN3-244ENST00000636147 VGLL2Q8N8G2 317 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 CFAP61Q8NHU2 1237 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 BAP1Q92560 729 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 CALR3Q96L12 384 aaKnown RBP11.89□□□□□ -0.51
CLN3-244ENST00000636147 INPP4AQ96PE3 977 aaPredicted RBP11.89□□□□□ -0.51
CLN3-244ENST00000636147 LRRC37BQ96QE4 947 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 BATF3Q9NR55 127 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 MCM8Q9UJA3 840 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 ANAPC4Q9UJX5 808 aa11.89□□□□□ -0.51
CLN3-244ENST00000636147 MYH8P13535 1937 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 PODXLO00592 558 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 TROVE2P10155 538 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLN3-244ENST00000636147 DLATP10515 647 aaKnown RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 DDR1Q08345 913 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 C12orf60Q5U649 245 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 KCNK18Q7Z418 384 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 ANKRD35Q8N283 1001 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 C9orf72Q96LT7 481 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 FAM118BQ9BPY3 351 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 ZNF148Q9UQR1 794 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 TRPC6Q9Y210 931 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 LOC102724428A0A0B4J2F2 783 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 EXOC1LA0A1B0GW35 172 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 PJA2O43164 708 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 AGTP01019 485 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 SIK1P57059 783 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 KCNMA1Q12791 1236 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 STRN3Q13033 797 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 PDCD7Q8N8D1 485 aaKnown RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 DTX3LQ8TDB6 740 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 SHISA4Q96DD7 197 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 ERP27Q96DN0 273 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 TTYH3Q9C0H2 523 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 NEUROG2Q9H2A3 272 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 KDM4CQ9H3R0 1056 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 THRAP3Q9Y2W1 955 aaKnown RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 ARL2BPQ9Y2Y0 163 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 MON2Q7Z3U7 1717 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 ALDH5A1P51649 535 aaPredicted RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 SP4Q02446 784 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 CTTNQ14247 550 aaKnown RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 CLUL1Q15846 466 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 MAD2L2Q9UI95 211 aa11.88□□□□□ -0.51
CLN3-244ENST00000636147 TTC7AQ9ULT0 858 aaPredicted RBP11.88□□□□□ -0.51
CLN3-244ENST00000636147 A0A0G2JND7 137 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 ATMINO43313 823 aaPredicted RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 CCND1P24385 295 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 CYTH2Q99418 400 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 SH3GL3Q99963 347 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 C15orf41Q9Y2V0 281 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 FNTAP49354 379 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 CASP4P49662 377 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 GSCP56915 257 aaPredicted RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 RCN2Q14257 317 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 TTBK2Q6IQ55 1244 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 ZNF662Q6ZS27 426 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 SPDYE1Q8NFV5 336 aaPredicted RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 TNFRSF25Q93038 417 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 ALG13Q9NP73 1137 aaKnown RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 SCOCQ9UIL1 159 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 ALG6Q9Y672 507 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 FAM187AA6NFU0 413 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 GNPATO15228 680 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 CYTH3O43739 400 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 OPHN1O60890 802 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 RFC4P35249 363 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 COPS2P61201 443 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 GTF2IP78347 998 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 SEMA3FQ13275 785 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 SEPT2Q15019 361 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 SEPT14Q6ZU15 432 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 EPM2AIP1Q7L775 607 aaPredicted RBP11.87□□□□□ -0.51
CLN3-244ENST00000636147 BLOC1S4Q9NUP1 217 aa11.87□□□□□ -0.51
CLN3-244ENST00000636147 MAPK13O15264 365 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 MYBP10242 640 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 DRD4P21917 467 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 HOXA13P31271 388 aaPredicted RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 CHRNA3P32297 505 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 GCLMP48507 274 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 MTM1Q13496 603 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 ZYXQ15942 572 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 AADACL2Q6P093 401 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 KIAA0825Q8IV33 1275 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 SUPT20HQ8NEM7 779 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 ACTRT1Q8TDG2 376 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 PURBQ96QR8 312 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 NAP1L4Q99733 375 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 BSDC1Q9NW68 430 aaPredicted RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 SYNGAP1Q96PV0 1343 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 USP17L10C9JJH3 530 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 K7ENM7 598 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms