RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 GTF2F1P35269 517 aaKnown RBP eCLIP20.76■□□□□ 0.91
CLN3-241ENST00000635861 IRS1P35568 1242 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 TBC1D8BQ0IIM8 1120 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 COASYQ13057 564 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 COLGALT1Q8NBJ5 622 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 MBOAT7Q96N66 472 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 PPP1R16BQ96T49 567 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 NIFKQ9BYG3 293 aaKnown RBP20.76■□□□□ 0.91
CLN3-241ENST00000635861 UNC45AQ9H3U1 944 aa20.76■□□□□ 0.91
CLN3-241ENST00000635861 FGF18O76093 207 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 GPC3P51654 580 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 PLCB3Q01970 1234 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 TARBP2Q15633 366 aaKnown RBP20.75■□□□□ 0.91
CLN3-241ENST00000635861 XKR3Q5GH77 459 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 B3GNT9Q6UX72 402 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 MIER3Q7Z3K6 550 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 ADGRD2Q7Z7M1 963 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 CWH43Q9H720 699 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 TYW1Q9NV66 732 aaKnown RBP20.75■□□□□ 0.91
CLN3-241ENST00000635861 MUC6Q6W4X9 2439 aa20.75■□□□□ 0.91
CLN3-241ENST00000635861 LINC01565O15544 149 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 CHMP2AO43633 222 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 PPFIA3O75145 1194 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 CDKL5O76039 1030 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 DARSP14868 501 aaKnown RBP20.74■□□□□ 0.91
CLN3-241ENST00000635861 PPM1AP35813 382 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 NRIP1P48552 1158 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 UGCGQ16739 394 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 THNSL1Q8IYQ7 743 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 ABI1Q8IZP0 508 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 LRRC43Q8N309 656 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 LRRC71Q8N4P6 559 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 SMRP1Q8NCR6 262 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 TLE6Q9H808 572 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 PPP4R2Q9NY27 417 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 DACT1Q9NYF0 836 aa20.74■□□□□ 0.91
CLN3-241ENST00000635861 FAM86C2PA6NEL3 165 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 EOMESO95936 686 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 IBSPP21815 317 aaPredicted RBP20.73■□□□□ 0.91
CLN3-241ENST00000635861 NONOQ15233 471 aaKnown RBP eCLIP20.73■□□□□ 0.91
CLN3-241ENST00000635861 CLUL1Q15846 466 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 KRT25Q7Z3Z0 450 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 CHST12Q9NRB3 414 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 CLEC1BQ9P126 229 aa20.73■□□□□ 0.91
CLN3-241ENST00000635861 PUF60Q9UHX1 559 aaKnown RBP20.73■□□□□ 0.91
CLN3-241ENST00000635861 A0A0U1RQF3 1178 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 CARNS1A5YM72 827 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 FSCN2O14926 492 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 CSPG5O95196 566 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 SRGAP2BP0DMP2 458 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 FGFR1P11362 822 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 DNM2P50570 870 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 NPY5RQ15761 445 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 ECHDC2Q86YB7 292 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 ETNPPLQ8TBG4 499 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 MICAL1Q8TDZ2 1067 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 MRPS27Q92552 414 aaKnown RBP20.72■□□□□ 0.91
CLN3-241ENST00000635861 SCLT1Q96NL6 688 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 CASD1Q96PB1 797 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 JPH2Q9BR39 696 aaPredicted RBP20.72■□□□□ 0.91
CLN3-241ENST00000635861 GCOM2Q9BZD3 368 aaPredicted RBP20.72■□□□□ 0.91
CLN3-241ENST00000635861 INO80BQ9C086 356 aaPredicted RBP20.72■□□□□ 0.91
CLN3-241ENST00000635861 SEPT9Q9UHD8 586 aaPredicted RBP20.72■□□□□ 0.91
CLN3-241ENST00000635861 ARID2Q68CP9 1835 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 STK36Q9NRP7 1315 aa20.72■□□□□ 0.91
CLN3-241ENST00000635861 ZNF318Q5VUA4 2279 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 IGKV6-21A0A0C4DH24 114 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 DKC1O60832 514 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-241ENST00000635861 TDP2O95551 362 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 XBP1P17861 261 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 DUSP6Q16828 381 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 ZNF410Q86VK4 478 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 NLRP7Q8WX94 980 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 NAP1L4Q99733 375 aaKnown RBP20.71■□□□□ 0.91
CLN3-241ENST00000635861 TRAIPQ9BWF2 469 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 MRPL9Q9BYD2 267 aaKnown RBP20.71■□□□□ 0.91
CLN3-241ENST00000635861 NGRNQ9NPE2 291 aaKnown RBP20.71■□□□□ 0.91
CLN3-241ENST00000635861 PDRG1Q9NUG6 133 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 PPME1Q9Y570 386 aa20.71■□□□□ 0.91
CLN3-241ENST00000635861 GLP2RO95838 553 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 GCFC2P16383 781 aaKnown RBP20.7■□□□□ 0.9
CLN3-241ENST00000635861 KRT17Q04695 432 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 HERC4Q5GLZ8 1057 aaPredicted RBP20.7■□□□□ 0.9
CLN3-241ENST00000635861 EXOC8Q8IYI6 725 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 FAM20AQ96MK3 541 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 ZNF558Q96NG5 402 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 CEP89Q96ST8 783 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 KCNH6Q9H252 994 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 RNF19AQ9NV58 838 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 DDX25Q9UHL0 483 aaKnown RBP20.7■□□□□ 0.9
CLN3-241ENST00000635861 PIEZO1Q92508 2521 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 MAFO75444 373 aaPredicted RBP20.7■□□□□ 0.9
CLN3-241ENST00000635861 STBD1O95210 358 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 SKIP12755 728 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 SFPQP23246 707 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-241ENST00000635861 PSMC5P62195 406 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 MTERF2Q49AM1 385 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 PPP4R3AQ6IN85 833 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 KCNT2Q6UVM3 1135 aa20.7■□□□□ 0.9
CLN3-241ENST00000635861 TMEM184AQ6ZMB5 413 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms