RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 KCNA1Q09470 495 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 SGO2Q562F6 1265 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 RPUSD2Q8IZ73 545 aaKnown RBP13.55□□□□□ -0.24
MSH6-213ENST00000614496 N4BP2L2Q92802 583 aaPredicted RBP13.55□□□□□ -0.24
MSH6-213ENST00000614496 TCHPQ9BT92 498 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 RUSC1Q9BVN2 902 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 TEKT3Q9BXF9 490 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 TMBIM4Q9HC24 238 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 BAZ2AQ9UIF9 1905 aaKnown RBP13.55□□□□□ -0.24
MSH6-213ENST00000614496 GAS8O95995 478 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 IFNB1P01574 187 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 HNRNPH3P31942 346 aaKnown RBP13.55□□□□□ -0.24
MSH6-213ENST00000614496 NUGGCQ68CJ6 796 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 HAS1Q92839 578 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 DNAJC19Q96DA6 116 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 CHMP6Q96FZ7 201 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 NACC1Q96RE7 527 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 CNOT10Q9H9A5 744 aaKnown RBP13.55□□□□□ -0.24
MSH6-213ENST00000614496 GDF3Q9NR23 364 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 PI4KBQ9UBF8 816 aa13.55□□□□□ -0.24
MSH6-213ENST00000614496 NFIAQ12857 509 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 AP3B2Q13367 1082 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 XKR9Q5GH70 373 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 KAZNQ674X7 775 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 USP37Q86T82 979 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 FNBP1Q96RU3 617 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 DBR1Q9UK59 544 aaKnown RBP13.54□□□□□ -0.24
MSH6-213ENST00000614496 A0A1B0GUA9 196 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 CHN1P15882 459 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 CRKP46108 304 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 SETDB1Q15047 1291 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 CCDC13Q8IYE1 715 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 OGFOD1Q8N543 542 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 CYP2W1Q8TAV3 490 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 PURBQ96QR8 312 aaKnown RBP13.54□□□□□ -0.24
MSH6-213ENST00000614496 ECM2O94769 699 aaPredicted RBP13.54□□□□□ -0.24
MSH6-213ENST00000614496 ATP5DP30049 168 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 MXI1P50539 228 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 SMTNP53814 917 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 GIT2Q14161 759 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 HGSNATQ68CP4 663 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 RAPGEF5Q92565 580 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 EMSYQ7Z589 1322 aa13.54□□□□□ -0.24
MSH6-213ENST00000614496 ECEL1O95672 775 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 ALAS1P13196 640 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 FMO5P49326 533 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 PDE6CP51160 858 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 TMEM119Q4V9L6 283 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 CCDC137Q6PK04 289 aaKnown RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 C1orf54Q8WWF1 131 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 IFT74Q96LB3 600 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 FAM20AQ96MK3 541 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 HEMGNQ9BXL5 484 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 THAP2Q9H0W7 228 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 IKZF4Q9H2S9 585 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 TDRD3Q9H7E2 651 aaKnown RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 POC1B-GALNT4F8VUJ3 575 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 SMARCA1P28370 1054 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 HOXA7P31268 230 aaPredicted RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 ZBTB16Q05516 673 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 CROCCP2Q86T23 111 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 COA1Q9GZY4 146 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 PPP1R1BQ9UD71 204 aaPredicted RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 POLLQ9UGP5 575 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 NWD2Q9ULI1 1742 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 COL1A1P02452 1464 aaPredicted RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 TNNI1P19237 187 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 KIAA1755Q5JYT7 1200 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 KLHL29Q96CT2 875 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 VPS37BQ9H9H4 285 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 SLC40A1Q9NP59 571 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 AIPL1Q9NZN9 384 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 CAND2O75155 1236 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 MAPK4P31152 587 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 NEDD9Q14511 834 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 SLC29A2Q14542 456 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 COG2Q14746 738 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 WDR44Q5JSH3 913 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 CDC42EP5Q6NZY7 148 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 LRIG3Q6UXM1 1119 aa13.53□□□□□ -0.24
MSH6-213ENST00000614496 PRMT1Q99873 361 aaKnown RBP13.53□□□□□ -0.24
MSH6-213ENST00000614496 TESPA1A2RU30 521 aaPredicted RBP13.52□□□□□ -0.24
MSH6-213ENST00000614496 EYA4O95677 639 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 ATF2P15336 505 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 ATF7P17544 494 aaPredicted RBP13.52□□□□□ -0.24
MSH6-213ENST00000614496 RPA1P27694 616 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 SKOR1P84550 965 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 ZNF844Q08AG5 666 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 CCDC6Q16204 474 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 C6orf118Q5T5N4 469 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 RHOT2Q8IXI1 618 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 ALG6Q9Y672 507 aa13.52□□□□□ -0.24
MSH6-213ENST00000614496 STAT2P52630 851 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 GPC5P78333 572 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 CLUL1Q15846 466 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 HP1BP3Q5SSJ5 553 aaPredicted RBP13.52□□□□□ -0.25
MSH6-213ENST00000614496 FAM47EQ6ZV65 393 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 DPH6Q7L8W6 267 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 JAMLQ86YT9 394 aa13.52□□□□□ -0.25
MSH6-213ENST00000614496 PARP9Q8IXQ6 854 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms