RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ADAM2Q99965 735 aa15.81■□□□□ 0.12
SHKBP1-218ENST00000598907 TBC1D17Q9HA65 648 aa15.81■□□□□ 0.12
SHKBP1-218ENST00000598907 SH2B1Q9NRF2 756 aaPredicted RBP15.81■□□□□ 0.12
SHKBP1-218ENST00000598907 RNF216Q9NWF9 866 aaPredicted RBP15.81■□□□□ 0.12
SHKBP1-218ENST00000598907 ERAP1Q9NZ08 941 aa15.81■□□□□ 0.12
SHKBP1-218ENST00000598907 GPR179Q6PRD1 2367 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 KRBA1A5PL33 1030 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 SPDYE4A6NLX3 237 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 ZBTB43O43298 467 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 CALM1P0DP23 149 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 CALM2P0DP24 149 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 CALM3P0DP25 149 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 EPCAMP16422 314 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 KRT17Q04695 432 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 ST3GAL1Q11201 340 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 KCNT2Q6UVM3 1135 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 CCDC149Q6ZUS6 474 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 SUMF1Q8NBK3 374 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 ZNF558Q96NG5 402 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 CELF4Q9BZC1 486 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 KCNK12Q9HB15 430 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 ATP6V0A4Q9HBG4 840 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 FAM217BQ9NTX9 383 aaPredicted RBP15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 MAP3K20Q9NYL2 800 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 PKD2L1Q9P0L9 805 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 SQORQ9Y6N5 450 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 FANCMQ8IYD8 2048 aa15.8■□□□□ 0.12
SHKBP1-218ENST00000598907 KINO60870 393 aaKnown RBP15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 INSRRP14616 1297 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 KRT76Q01546 638 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 TBC1D8BQ0IIM8 1120 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 CUL4AQ13619 759 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 GRM4Q14833 912 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 SYNE3Q6ZMZ3 975 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 HSCBQ8IWL3 235 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 STAG2Q8N3U4 1231 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 MRPL43Q8N983 215 aaKnown RBP15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 FANCBQ8NB91 859 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 RSAD2Q8WXG1 361 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 AUTS2Q8WXX7 1259 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 GTF3C6Q969F1 213 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 MYL10Q9BUA6 226 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 DZANK1Q9NVP4 752 aa15.79■□□□□ 0.12
SHKBP1-218ENST00000598907 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 PALM3A6NDB9 673 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 POTEMA6NI47 508 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 GOLGA8BA8MQT2 603 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 RPLP2P05387 115 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 ADRB1P08588 477 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 SDHBP21912 280 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 PPM1AP35813 382 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 ANP32AP39687 249 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 SCRN1Q12765 414 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 POTEGQ6S5H5 508 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 OTOP3Q7RTS5 596 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 TMEM87AQ8NBN3 555 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 SLKQ9H2G2 1235 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 RGS18Q9NS28 235 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 C1orf112Q9NSG2 853 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 MAD2L2Q9UI95 211 aa15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 NOC2LQ9Y3T9 749 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-218ENST00000598907 C9IYK1 514 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 ZBTB5O15062 677 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 RPS6KA5O75582 802 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 STAM2O75886 525 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 RXRAP19793 462 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 KCNA4P22459 653 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 CDC27P30260 824 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 METAP2P50579 478 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 VARS2Q5ST30 1063 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 LRRC55Q6ZSA7 311 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 SLC24A5Q71RS6 500 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 MICU3Q86XE3 530 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 RAB11FIP4Q86YS3 637 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 C1orf210Q8IVY1 113 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 NECAB1Q8N987 351 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 PPP1R16BQ96T49 567 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 SPG21Q9NZD8 308 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 USP18Q9UMW8 372 aa15.77■□□□□ 0.12
SHKBP1-218ENST00000598907 FRMPD4Q14CM0 1322 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 GSTTP1A0A1W2PQM5 241 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 GOLGA8AA7E2F4 631 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 KLRF2D3W0D1 207 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 ADD1P35611 737 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 CCT2P78371 535 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 LMNB2Q03252 620 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 STK3Q13188 491 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 BECN1Q14457 450 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 NTRK3Q16288 839 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 RTN1Q16799 776 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 CABP7Q86V35 215 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 ABI1Q8IZP0 508 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 LRRC43Q8N309 656 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 CTCFLQ8NI51 663 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 TMEM40Q8WWA1 233 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 TMEM117Q9H0C3 514 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 SMARCAD1Q9H4L7 1026 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 RBM28Q9NW13 759 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 TMEM161AQ9NX61 479 aa15.76■□□□□ 0.11
SHKBP1-218ENST00000598907 RRN3P2A6NIE6 340 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms