RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 GCOM2Q9BZD3 368 aaPredicted RBP16.9■□□□□ 0.3
LIG1-215ENST00000597901 LMAN2LQ9H0V9 348 aa16.9■□□□□ 0.3
LIG1-215ENST00000597901 ELAC1Q9H777 363 aaKnown RBP16.9■□□□□ 0.3
LIG1-215ENST00000597901 ATP6V0A4Q9HBG4 840 aa16.9■□□□□ 0.3
LIG1-215ENST00000597901 CYP26B1Q9NR63 512 aa16.9■□□□□ 0.3
LIG1-215ENST00000597901 WRAP73Q9P2S5 460 aaPredicted RBP16.9■□□□□ 0.3
LIG1-215ENST00000597901 PCDHA12Q9UN75 941 aa16.9■□□□□ 0.3
LIG1-215ENST00000597901 PLAGL2Q9UPG8 496 aa16.9■□□□□ 0.3
LIG1-215ENST00000597901 CSDE1O75534 798 aaKnown RBP16.89■□□□□ 0.29
LIG1-215ENST00000597901 SLITRK3O94933 977 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 FGFR4P22455 802 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 GUCY1B3Q02153 619 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 SPIRE1Q08AE8 756 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 NAALADL2Q58DX5 795 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 TCEAL5Q5H9L2 206 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 SPPL3Q8TCT6 385 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 P2RX5Q93086 422 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 DYDC2Q96IM9 177 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 SCLT1Q96NL6 688 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 JPH2Q9BR39 696 aaPredicted RBP16.89■□□□□ 0.29
LIG1-215ENST00000597901 UBE2ZQ9H832 354 aaPredicted RBP16.89■□□□□ 0.29
LIG1-215ENST00000597901 ALG13Q9NP73 1137 aaKnown RBP16.89■□□□□ 0.29
LIG1-215ENST00000597901 TMEM161AQ9NX61 479 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 TTC3P53804 2025 aa16.89■□□□□ 0.29
LIG1-215ENST00000597901 COL4A6Q14031 1691 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 A0A087WZ62 844 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 TBKBP1A7MCY6 615 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 WNT7AO00755 349 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 ZBTB39O15060 712 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 TXKP42681 527 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 CTTNQ14247 550 aaKnown RBP16.88■□□□□ 0.29
LIG1-215ENST00000597901 SAFBQ15424 915 aaKnown RBP eCLIP16.88■□□□□ 0.29
LIG1-215ENST00000597901 CALCRLQ16602 461 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 TIGD5Q53EQ6 642 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 OTUD6AQ7L8S5 288 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 RHPN2Q8IUC4 686 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 KSR1Q8IVT5 923 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 TPH2Q8IWU9 490 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 EXOC8Q8IYI6 725 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 KLHL23Q8NBE8 558 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 C8orf76Q96K31 380 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 CEP170P1Q96L14 293 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 MTMR9Q96QG7 549 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 HSD17B14Q9BPX1 270 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 FDXACB1Q9BRP7 624 aaPredicted RBP16.88■□□□□ 0.29
LIG1-215ENST00000597901 NSUN3Q9H649 340 aaKnown RBP16.88■□□□□ 0.29
LIG1-215ENST00000597901 ZSWIM4Q9H7M6 989 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 TYW1Q9NV66 732 aaKnown RBP16.88■□□□□ 0.29
LIG1-215ENST00000597901 SIP14410 1827 aa16.88■□□□□ 0.29
LIG1-215ENST00000597901 ITGB1P05556 798 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 FGFR1P11362 822 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 ATP2B1P20020 1258 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 YWHABP31946 246 aaKnown RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 RBM25P49756 843 aaKnown RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 CAMK1Q14012 370 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 ECHDC2Q86YB7 292 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 NECAB3Q96P71 396 aaPredicted RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 EIF2AK1Q9BQI3 630 aaKnown RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 LXNQ9BS40 222 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 INO80BQ9C086 356 aaPredicted RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 DHX33Q9H6R0 707 aaKnown RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 TTC12Q9H892 705 aaPredicted RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 CHST12Q9NRB3 414 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 SH2B1Q9NRF2 756 aaPredicted RBP16.87■□□□□ 0.29
LIG1-215ENST00000597901 PPME1Q9Y570 386 aa16.87■□□□□ 0.29
LIG1-215ENST00000597901 A0A0U1RQF3 1178 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 KCNA5P22460 613 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 DNAJB1P25685 340 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 CYP4A11Q02928 519 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 LEXMQ3ZCV2 418 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 XKR9Q5GH70 373 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 SPOUT1Q5T280 376 aaKnown RBP16.86■□□□□ 0.29
LIG1-215ENST00000597901 ZNF410Q86VK4 478 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 FBXO18Q8NFZ0 1043 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 PRPF31Q8WWY3 499 aaKnown RBP16.86■□□□□ 0.29
LIG1-215ENST00000597901 SLC7A3Q8WY07 619 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 TMEM143Q96AN5 459 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 CASD1Q96PB1 797 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 RNF19AQ9NV58 838 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 PCDHB12Q9Y5F1 795 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 TRANK1O15050 2925 aa16.86■□□□□ 0.29
LIG1-215ENST00000597901 NEMFO60524 1076 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 EOMESO95936 686 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 RFC5P40937 340 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 POLGP54098 1239 aaPredicted RBP16.85■□□□□ 0.29
LIG1-215ENST00000597901 HMGN5P82970 282 aaKnown RBP16.85■□□□□ 0.29
LIG1-215ENST00000597901 LRRC55Q6ZSA7 311 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.85■□□□□ 0.29
LIG1-215ENST00000597901 POF1BQ8WVV4 589 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 PABPC5Q96DU9 382 aaKnown RBP16.85■□□□□ 0.29
LIG1-215ENST00000597901 TMEM117Q9H0C3 514 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 TMEM60Q9H2L4 133 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 FOXP1Q9H334 677 aaPredicted RBP16.85■□□□□ 0.29
LIG1-215ENST00000597901 CWH43Q9H720 699 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 IFT122Q9HBG6 1241 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 AAASQ9NRG9 546 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 DACT1Q9NYF0 836 aa16.85■□□□□ 0.29
LIG1-215ENST00000597901 MYH9P35579 1960 aaKnown RBP16.84■□□□□ 0.29
LIG1-215ENST00000597901 EVPLQ92817 2033 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 ASAP2O43150 1006 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms