RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 PPTC7Q8NI37 304 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 TMC2Q8TDI7 906 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 AFAP1L1Q8TED9 768 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 IQCDQ96DY2 449 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 PDLIM2Q96JY6 352 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 CNOT6LQ96LI5 555 aaKnown RBP6.82□□□□□ -1.32
LIG3-206ENST00000586058 PCMTD1Q96MG8 357 aaPredicted RBP6.82□□□□□ -1.32
LIG3-206ENST00000586058 CEP63Q96MT8 703 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 RUSC1Q9BVN2 902 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 KATNAL1Q9BW62 490 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 AP5M1Q9H0R1 490 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 SPC25Q9HBM1 224 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 KMT5AQ9NQR1 393 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 CYP26B1Q9NR63 512 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 TYW1Q9NV66 732 aaKnown RBP6.82□□□□□ -1.32
LIG3-206ENST00000586058 TBC1D7Q9P0N9 293 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 CGNQ9P2M7 1197 aaKnown RBP6.82□□□□□ -1.32
LIG3-206ENST00000586058 DDX41Q9UJV9 622 aaKnown RBP6.82□□□□□ -1.32
LIG3-206ENST00000586058 LHX6Q9UPM6 363 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 FRMD4BQ9Y2L6 1034 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 COL1A2P08123 1366 aa6.82□□□□□ -1.32
LIG3-206ENST00000586058 ANK1P16157 1881 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 PDCD11Q14690 1871 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 NPHP3-ACAD11A0A0J9YXS1 232 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 TRIM49BA6NDI0 452 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 CCDC169A6NNP5 214 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 PDXKO00764 312 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 ATG7O95352 703 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 CYP2B6P20813 491 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 BMP6P22004 513 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 SFPQP23246 707 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIG3-206ENST00000586058 NR2F2P24468 414 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 TMOD1P28289 359 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 MATR3P43243 847 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIG3-206ENST00000586058 TNFAIP2Q03169 654 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 ACVR2BQ13705 512 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 TFDP1Q14186 410 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 NCAPHQ15003 741 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 UGCGQ16739 394 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 DGKDQ16760 1214 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 KNOP1Q1ED39 458 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 TSR1Q2NL82 804 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 DUSP28Q4G0W2 176 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 HSP90AA4PQ58FG1 418 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 TCP11X2Q5H9J9 407 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 PLA2G4FQ68DD2 849 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 C1orf186Q6ZWK4 172 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 MAEAQ7L5Y9 396 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 PLPPR4Q7Z2D5 763 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 TMC6Q7Z403 805 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 PPFIBP1Q86W92 1011 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 ZBTB8OSQ8IWT0 167 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 DEPTORQ8TB45 409 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 LRRC15Q8TF66 581 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 BICD1Q96G01 975 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 ERO1AQ96HE7 468 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 ACCSQ96QU6 501 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 GPR20Q99678 358 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 SRRTQ9BXP5 876 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 XPO4Q9C0E2 1151 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 GBP3Q9H0R5 595 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 METTL14Q9HCE5 456 aaKnown RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 NRBP1Q9UHY1 535 aa6.81□□□□□ -1.32
LIG3-206ENST00000586058 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIG3-206ENST00000586058 MAFBQ9Y5Q3 323 aaPredicted RBP6.81□□□□□ -1.32
LIG3-206ENST00000586058 RBM47A0AV96 593 aaKnown RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 LRRIQ4A6NIV6 560 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 RSPH10B2B2RC85 870 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 SLC16A3O15427 465 aaKnown RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 ZEB2O60315 1214 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 HBP1O60381 514 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 COBLO75128 1261 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 GNRH1P01148 92 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 RSPH10BP0C881 870 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ATP1A3P13637 1013 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 KRT13P13646 458 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 AKR1A1P14550 325 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MARK3P27448 753 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MAP2K2P36507 400 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ADCYAP1R1P41586 468 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 PSMC4P43686 418 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ZNF131P52739 623 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 PEX3P56589 373 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 RTP1P59025 263 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 SNRPFP62306 86 aaKnown RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 LACTBP83111 547 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 SP3Q02447 781 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 EHHADHQ08426 723 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MXD4Q14582 209 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 LRRC41Q15345 812 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MAN2A1Q16706 1144 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 BMT2Q1RMZ1 405 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 CCDC144BQ3MJ40 725 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ARSHQ5FYA8 562 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MORN1Q5T089 497 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 CDKAL1Q5VV42 579 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 CEP135Q66GS9 1140 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 SPECC1LQ69YQ0 1117 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 CENPPQ6IPU0 288 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 TTI2Q6NXR4 508 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms