RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 MGEA5O60502 916 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 DARSP14868 501 aaKnown RBP16.6■□□□□ 0.25
SS18-212ENST00000579061 ATP2B1P20020 1258 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 NPEPPSP55786 919 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 DRP2Q13474 957 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 CTTNQ14247 550 aaKnown RBP16.6■□□□□ 0.25
SS18-212ENST00000579061 DSC3Q14574 896 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 EPC2Q52LR7 807 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 TTC38Q5R3I4 469 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 PLA2G4FQ68DD2 849 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 SLC24A5Q71RS6 500 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 TPH2Q8IWU9 490 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 TMEM192Q8IY95 271 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 SLC7A3Q8WY07 619 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 SH2D3AQ9BRG2 576 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 C17orf80Q9BSJ5 609 aa16.6■□□□□ 0.25
SS18-212ENST00000579061 SUCLA2Q9P2R7 463 aaPredicted RBP16.6■□□□□ 0.25
SS18-212ENST00000579061 FNDC1Q4ZHG4 1894 aaPredicted RBP16.6■□□□□ 0.25
SS18-212ENST00000579061 C9IYK1 514 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 RB1P06400 928 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 OR52Z1P0C646 297 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 XRCC6P12956 609 aaKnown RBP eCLIP16.59■□□□□ 0.25
SS18-212ENST00000579061 POLGP54098 1239 aaPredicted RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 FAM189BP81408 668 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 CYP4A11Q02928 519 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 XKR9Q5GH70 373 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 CMTR2Q8IYT2 770 aaKnown RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 NLRP7Q8WX94 980 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 CLP1Q92989 425 aaKnown RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 SCLT1Q96NL6 688 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 GCOM2Q9BZD3 368 aaPredicted RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 INO80BQ9C086 356 aaPredicted RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 ELAC1Q9H777 363 aaKnown RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 ANKEF1Q9NU02 776 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 MTUS1Q9ULD2 1270 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 LRFN2Q9ULH4 789 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.59■□□□□ 0.25
SS18-212ENST00000579061 PCDHB7Q9Y5E2 793 aa16.59■□□□□ 0.25
SS18-212ENST00000579061 C5orf67F2Z3F1 127 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 H3BNC9 293 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 LINC00271P0C7V0 271 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 ZSCAN20P17040 1043 aaPredicted RBP16.58■□□□□ 0.24
SS18-212ENST00000579061 BTG3Q14201 252 aaPredicted RBP16.58■□□□□ 0.24
SS18-212ENST00000579061 ZNF174Q15697 407 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 CCDC85BQ15834 202 aaPredicted RBP16.58■□□□□ 0.24
SS18-212ENST00000579061 ZNF579Q8NAF0 562 aaKnown RBP16.58■□□□□ 0.24
SS18-212ENST00000579061 GDPD5Q8WTR4 605 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 TCP11Q8WWU5 503 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 PPM1EQ8WY54 764 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 TUFT1Q9NNX1 390 aa16.58■□□□□ 0.24
SS18-212ENST00000579061 REV3LO60673 3130 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 KIAA1671Q9BY89 1806 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 POTEMA6NI47 508 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 ASAP2O43150 1006 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 GJB2P29033 226 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 BMPR1AP36894 532 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 EMC2Q15006 297 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 RHPN2Q8IUC4 686 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 PSPC1Q8WXF1 523 aaKnown RBP16.57■□□□□ 0.24
SS18-212ENST00000579061 ZNF668Q96K58 619 aaPredicted RBP16.57■□□□□ 0.24
SS18-212ENST00000579061 POLR3CQ9BUI4 534 aaPredicted RBP16.57■□□□□ 0.24
SS18-212ENST00000579061 PLVAPQ9BX97 442 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 CHST12Q9NRB3 414 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 TMEM161AQ9NX61 479 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 SMC3Q9UQE7 1217 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 COL4A3BPQ9Y5P4 624 aa16.57■□□□□ 0.24
SS18-212ENST00000579061 A0A087WZ62 844 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 ZBTB39O15060 712 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 SPATA31C1P0DKV0 1188 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 MUTP22033 750 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 SFPQP23246 707 aaKnown RBP eCLIP16.56■□□□□ 0.24
SS18-212ENST00000579061 TOB1P50616 345 aaPredicted RBP16.56■□□□□ 0.24
SS18-212ENST00000579061 GPM6BQ13491 265 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 PTPROQ16827 1216 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 MICALL1Q8N3F8 863 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 C4orf32Q8N8J7 132 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 ERMNQ8TAM6 284 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 FDXACB1Q9BRP7 624 aaPredicted RBP16.56■□□□□ 0.24
SS18-212ENST00000579061 DACT1Q9NYF0 836 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 THEGQ9P2T0 379 aa16.56■□□□□ 0.24
SS18-212ENST00000579061 LAD1O00515 517 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 HOXA2O43364 376 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 DGAT1O75907 488 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 RPA1P27694 616 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 CTNNB1P35222 781 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 TECP42680 631 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 RARRES1P49788 294 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 FXR2P51116 673 aaKnown RBP eCLIP16.55■□□□□ 0.24
SS18-212ENST00000579061 CUL4AQ13619 759 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 NAALADL2Q58DX5 795 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 RILPL1Q5EBL4 403 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 SRGAP1Q7Z6B7 1085 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 ATXN2LQ8WWM7 1075 aaKnown RBP16.55■□□□□ 0.24
SS18-212ENST00000579061 PRPF31Q8WWY3 499 aaKnown RBP16.55■□□□□ 0.24
SS18-212ENST00000579061 P2RX5Q93086 422 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 TMEM143Q96AN5 459 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 MRPL38Q96DV4 380 aaKnown RBP16.55■□□□□ 0.24
SS18-212ENST00000579061 CCDC43Q96MW1 224 aaKnown RBP16.55■□□□□ 0.24
SS18-212ENST00000579061 MTRQ99707 1265 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 C11orf84Q9BUA3 381 aaPredicted RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms