RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	JPH1	Q9HDC5	661 aa	Predicted RBP	13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	DLGAP2	Q9P1A6	1054 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	SLC9A2	Q9UBY0	812 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	UBIAD1	Q9Y5Z9	338 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	PIK3CD	O00329	1044 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	BCAR1	P56945	870 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	ACTR2	P61160	394 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	ANKRD45	Q5TZF3	282 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	MAMSTR	Q6ZN01	415 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	PLPPR4	Q7Z2D5	763 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	TNPO1	Q92973	898 aa	Known RBP	13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	ZBP1	Q9H171	429 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	RCAN3	Q9UKA8	241 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	SIT1	Q9Y3P8	196 aa		13.46	□□□□□ -0.25
CLK3-222	ENST00000568232	HOXA2	O43364	376 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	LRRN2	O75325	713 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	SEC24B	O95487	1268 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	VTN	P04004	478 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	GLUL	P15104	373 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	SDS	P20132	328 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	CRYBB1	P53674	252 aa	Predicted RBP	13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	MFAP1	P55081	439 aa	Known RBP	13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	IMMT	Q16891	758 aa	Known RBP	13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	LETM2	Q2VYF4	491 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	VARS2	Q5ST30	1063 aa	Known RBP	13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	ODR4	Q5SWX8	454 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	KIAA0319	Q5VV43	1072 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	ECHDC2	Q86YB7	292 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	SLC44A3	Q8N4M1	653 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	HELQ	Q8TDG4	1101 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	SFXN1	Q9H9B4	322 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	JADE2	Q9NQC1	790 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	IGSF9	Q9P2J2	1179 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	NCDN	Q9UBB6	729 aa		13.45	□□□□□ -0.26
CLK3-222	ENST00000568232	DENND4A	Q7Z401	1863 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	KIN	O60870	393 aa	Known RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	GPR32	O75388	356 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	ALDH7A1	P49419	539 aa	Known RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	BMS1	Q14692	1282 aa	Known RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	UBE2S	Q16763	222 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	LCE2D	Q5TA82	110 aa	Predicted RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	CWC27	Q6UX04	472 aa	Known RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	GPR152	Q8TDT2	470 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	TMEM169	Q96HH4	297 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	CNNM2	Q9H8M5	875 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	KCNH7	Q9NS40	1196 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	IRAK3	Q9Y616	596 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	SPTBN2	O15020	2390 aa		13.44	□□□□□ -0.26
CLK3-222	ENST00000568232	BAHCC1	Q9P281	2608 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	USP24	Q9UPU5	2620 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	LAMA4	Q16363	1823 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	CHD8	Q9HCK8	2581 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	GPR179	Q6PRD1	2367 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	ZBTB42	B2RXF5	422 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	CTSA	P10619	480 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	GBP2	P32456	591 aa	Predicted RBP	13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	TROAP	Q12815	778 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	TICAM2	Q86XR7	235 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	CHAMP1	Q96JM3	812 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	FOXQ1	Q9C009	403 aa		13.43	□□□□□ -0.26
CLK3-222	ENST00000568232	MAP1B	P46821	2468 aa	Known RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	MAFG	O15525	162 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	HBP1	O60381	514 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	MYB	P10242	640 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	SRF	P11831	508 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	ZSCAN20	P17040	1043 aa	Predicted RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	ITGB3BP	Q13352	177 aa	Predicted RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	WTAP	Q15007	396 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	PHLDB3	Q6NSJ2	640 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	DDX53	Q86TM3	631 aa	Known RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	ZNF668	Q96K58	619 aa	Predicted RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	VN1R3	Q9BXE9	311 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	PSTPIP2	Q9H939	334 aa		13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	CDV3	Q9UKY7	258 aa	Known RBP	13.42	□□□□□ -0.26
CLK3-222	ENST00000568232	IGKV6D-21	A0A0A0MT36	114 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	BACH1	O14867	736 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	IFIT3	O14879	490 aa	Known RBP	13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	ATG7	O95352	703 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	C22orf31	O95567	290 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	CCNE2	O96020	404 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	SSB	P05455	408 aa	Known RBP eCLIP	13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	ADRB1	P08588	477 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	ATP4A	P20648	1035 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	SDHB	P21912	280 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	FGFR4	P22455	802 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	KLRC2	P26717	231 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	CLCN4	P51793	760 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	COL9A2	Q14055	689 aa	Predicted RBP	13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	GIT2	Q14161	759 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	PTPN14	Q15678	1187 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	LONRF3	Q496Y0	759 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	ZNF598	Q86UK7	904 aa	Known RBP	13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	METTL13	Q8N6R0	699 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms