RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PDXDC2PQ6P474 469 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 ZC3H14Q6PJT7 736 aaKnown RBP8.34□□□□□ -1.07
VPS4A-203ENST00000564399 ECHDC2Q86YB7 292 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 PLEKHM2Q8IWE5 1019 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 NCOA7Q8NI08 942 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 HELQQ8TDG4 1101 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 CNTNAP3BQ96NU0 1288 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 LZTS2Q9BRK4 669 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 CNTNAP3Q9BZ76 1288 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 KCNK12Q9HB15 430 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 RNF19AQ9NV58 838 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 DUSP12Q9UNI6 340 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 WDR81Q562E7 1941 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 COL1A2P08123 1366 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 hCG_1642624A0A1W2PR95 340 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ABCB7O75027 752 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ZC3H11AO75152 810 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 DDAH1O94760 285 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ATG7O95352 703 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 PLEKHA8P1O95397 391 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CYP21A2P08686 494 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SMARCA1P28370 1054 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF76P36508 570 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 GNAQP50148 359 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 BCAR1P56945 870 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 NLRP11P59045 1033 aaKnown RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ITGB3BPQ13352 177 aaPredicted RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 GIT2Q14161 759 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 NONOQ15233 471 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CLLU1OSQ5K130 101 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SPECC1Q5M775 1068 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SWSAP1Q6NVH7 229 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 NFXL1Q6ZNB6 911 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 GPR149Q86SP6 731 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 PPFIBP1Q86W92 1011 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF654Q8IZM8 581 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CMTR1Q8N1G2 835 aaKnown RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CCDC82Q8N4S0 544 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 DCLK2Q8N568 766 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SRBD1Q8N5C6 995 aaKnown RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 FEZF2Q8TBJ5 459 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SLC22A17Q8WUG5 538 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 RUBCNQ92622 972 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SCLT1Q96NL6 688 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 MAP7D2Q96T17 732 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 MAP3K14Q99558 947 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 MRPL9Q9BYD2 267 aaKnown RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ZBP1Q9H171 429 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 SFXN1Q9H9B4 322 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF302Q9NR11 478 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 IGSF9Q9P2J2 1179 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CA14Q9ULX7 337 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 AKT3Q9Y243 479 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CHD8Q9HCK8 2581 aa8.33□□□□□ -1.08
VPS4A-203ENST00000564399 CNOT1A5YKK6 2376 aaKnown RBP8.33□□□□□ -1.08
VPS4A-203ENST00000564399 IGKV6D-21A0A0A0MT36 114 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 E7EWF7 191 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 NARSO43776 548 aaKnown RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 GPR32O75388 356 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 C22orf31O95567 290 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 CCNE2O96020 404 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 CTSAP10619 480 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 KLRC2P26717 231 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 GBP2P32456 591 aaPredicted RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 CLCN3P51790 818 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 POLGP54098 1239 aaPredicted RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 TBC1D8BQ0IIM8 1120 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 RSPO4Q2I0M5 234 aaPredicted RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 CEP55Q53EZ4 464 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 MIS18BP1Q6P0N0 1132 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 ABHD15Q6UXT9 468 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 HEATR3Q7Z4Q2 680 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 DDX53Q86TM3 631 aaKnown RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 CCDC60Q8IWA6 550 aaPredicted RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 IGDCC4Q8TDY8 1250 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 PGBD1Q96JS3 809 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF668Q96K58 619 aaPredicted RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 IL25Q9H293 177 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 OSBPL3Q9H4L5 887 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 TBC1D17Q9HA65 648 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 AGO4Q9HCK5 861 aaKnown RBP8.32□□□□□ -1.08
VPS4A-203ENST00000564399 DLL3Q9NYJ7 618 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 WNT16Q9UBV4 365 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 TCEAL9Q9UHQ7 104 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 IRAK3Q9Y616 596 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 MIA3Q5JRA6 1907 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 DOCK6Q96HP0 2047 aa8.32□□□□□ -1.08
VPS4A-203ENST00000564399 KMT2BQ9UMN6 2715 aaPredicted RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 A0A0U1RQF3 1178 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 KRBA1A5PL33 1030 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 CARNS1A5YM72 827 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 CCDC69A6NI79 296 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 ZBTB42B2RXF5 422 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 MAGEB2O15479 319 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 SSBP05455 408 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 DCNP07585 359 aaKnown RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 SP9P0CG40 484 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 RXRAP19793 462 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 ATP4AP20648 1035 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 EIF4BP23588 611 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms