RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 BCL7CQ8WUZ0 217 aaPredicted RBP11.3□□□□□ -0.6
TPM1-225ENST00000560679 TNPO1Q92973 898 aaKnown RBP11.3□□□□□ -0.6
TPM1-225ENST00000560679 PGBD1Q96JS3 809 aa11.3□□□□□ -0.6
TPM1-225ENST00000560679 RTP3Q9BQQ7 232 aa11.3□□□□□ -0.6
TPM1-225ENST00000560679 SDF4Q9BRK5 362 aa11.3□□□□□ -0.6
TPM1-225ENST00000560679 CFAP47Q6ZTR5 3102 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 KRBA1A5PL33 1030 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 N4BP1O75113 896 aaKnown RBP11.29□□□□□ -0.6
TPM1-225ENST00000560679 RXRAP19793 462 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 KIF5BP33176 963 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 CA8P35219 290 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 METAP2P50579 478 aaKnown RBP eCLIP11.29□□□□□ -0.6
TPM1-225ENST00000560679 CLCN3P51790 818 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 BCAR1P56945 870 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 TDGQ13569 410 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 SART3Q15020 963 aaKnown RBP11.29□□□□□ -0.6
TPM1-225ENST00000560679 ATAT1Q5SQI0 421 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 TYW1BQ6NUM6 668 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 TMC5Q6UXY8 1006 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 RALYLQ86SE5 291 aaKnown RBP11.29□□□□□ -0.6
TPM1-225ENST00000560679 CHD1LQ86WJ1 897 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 LINC01465Q8N7H1 131 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 HELQQ8TDG4 1101 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 CNTNAP3BQ96NU0 1288 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 VN1R3Q9BXE9 311 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 CNTNAP3Q9BZ76 1288 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 KCNK12Q9HB15 430 aa11.29□□□□□ -0.6
TPM1-225ENST00000560679 U3KPZ7 1027 aaPredicted RBP11.29□□□□□ -0.6
TPM1-225ENST00000560679 SPTBN2O15020 2390 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 DDX39AO00148 427 aaKnown RBP11.28□□□□□ -0.6
TPM1-225ENST00000560679 BACH1O14867 736 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 CXCL14O95715 111 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 CTSAP10619 480 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 NUCB1Q02818 461 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 CEP55Q53EZ4 464 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 ZNF484Q5JVG2 852 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 CCDC149Q6ZUS6 474 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 GPR149Q86SP6 731 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 ABI1Q8IZP0 508 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 VPS52Q8N1B4 723 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 RNF169Q8NCN4 708 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 NCOA7Q8NI08 942 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 KCNG4Q8TDN1 519 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 RIN2Q8WYP3 895 aaPredicted RBP11.28□□□□□ -0.6
TPM1-225ENST00000560679 LZTS2Q9BRK4 669 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 ADAMTS10Q9H324 1103 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 DLL3Q9NYJ7 618 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 FBXL21Q9UKT6 434 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 IRAK3Q9Y616 596 aa11.28□□□□□ -0.6
TPM1-225ENST00000560679 MEIS1O00470 390 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 DHX15O43143 795 aaKnown RBP11.27□□□□□ -0.61
TPM1-225ENST00000560679 B4GALT3O60512 393 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 GSPT1P15170 499 aaKnown RBP11.27□□□□□ -0.61
TPM1-225ENST00000560679 FGFR4P22455 802 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 PUM1Q14671 1186 aaKnown RBP eCLIP11.27□□□□□ -0.61
TPM1-225ENST00000560679 PTPN14Q15678 1187 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 FAM160B1Q5W0V3 765 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 WWC2Q6AWC2 1192 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 PDXDC2PQ6P474 469 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 HEATR3Q7Z4Q2 680 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 CABP7Q86V35 215 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 RAB11FIP4Q86YS3 637 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 METTL13Q8N6R0 699 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 ACSF2Q96CM8 615 aaPredicted RBP11.27□□□□□ -0.61
TPM1-225ENST00000560679 TMEM169Q96HH4 297 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 ZNF668Q96K58 619 aaPredicted RBP11.27□□□□□ -0.61
TPM1-225ENST00000560679 ANO3Q9BYT9 981 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 SEMA4AQ9H3S1 761 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 SFXN1Q9H9B4 322 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 ZNF302Q9NR11 478 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 DLGAP2Q9P1A6 1054 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 WDR81Q562E7 1941 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 COL4A3Q01955 1670 aa11.27□□□□□ -0.61
TPM1-225ENST00000560679 MYH9P35579 1960 aaKnown RBP11.27□□□□□ -0.61
TPM1-225ENST00000560679 DOCK8Q8NF50 2099 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 A0A0U1RQF3 1178 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 FAM86B1E9PN63 330 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 SH2B2O14492 632 aaPredicted RBP11.26□□□□□ -0.61
TPM1-225ENST00000560679 ZC3H11AO75152 810 aaKnown RBP eCLIP11.26□□□□□ -0.61
TPM1-225ENST00000560679 CFHP08603 1231 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 FAM86B2P0C5J1 330 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 SREBF1P36956 1147 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 POLGP54098 1239 aaPredicted RBP11.26□□□□□ -0.61
TPM1-225ENST00000560679 NLRP11P59045 1033 aaKnown RBP11.26□□□□□ -0.61
TPM1-225ENST00000560679 SWSAP1Q6NVH7 229 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 TMTC3Q6ZXV5 915 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 OTOP3Q7RTS5 596 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 LRRC71Q8N4P6 559 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 DCLK2Q8N568 766 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 RSAD2Q8WXG1 361 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 IGSF21Q96ID5 467 aa11.26□□□□□ -0.61
TPM1-225ENST00000560679 MRPL9Q9BYD2 267 aaKnown RBP11.26□□□□□ -0.61
TPM1-225ENST00000560679 MAP1BP46821 2468 aaKnown RBP11.26□□□□□ -0.61
TPM1-225ENST00000560679 USP24Q9UPU5 2620 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 IGLV3-22A0A075B6J6 115 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 IGHDP01880 384 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 DARSP14868 501 aaKnown RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 EIF4BP23588 611 aaKnown RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 ALDH7A1P49419 539 aaKnown RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 GNAQP50148 359 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms