RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 LRRC4CQ9HCJ2 640 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 RGL1Q9NZL6 768 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 FBXL5Q9UKA1 691 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 PCDHAC2Q9Y5I4 1007 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 DCDC2CA8MYV0 355 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 FAM86B1E9PN63 330 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 FLOT1O75955 427 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 NR3C1P04150 777 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 FAM86B2P0C5J1 330 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 SPATA31C1P0DKV0 1188 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 CDR1P51861 262 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 B4GALNT4Q76KP1 1039 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 MYLK4Q86YV6 388 aaPredicted RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 ARL10Q8N8L6 244 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 MYCBPAPQ8TBZ2 947 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 SCFD2Q8WU76 684 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 RUSC1Q9BVN2 902 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 BCS1LQ9Y276 419 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 ARFGEF1Q9Y6D6 1849 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 MEIS2O14770 477 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 SERPINB2P05120 415 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 H2AFZP0C0S5 128 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 EEF2P13639 858 aaKnown RBP12.29□□□□□ -0.44
CUX1-218ENST00000560541 SPIRE1Q08AE8 756 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 IFT88Q13099 833 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 EPHA7Q15375 998 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 H2AFVQ71UI9 128 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 PIGOQ8TEQ8 1089 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 RBM17Q96I25 401 aaKnown RBP12.29□□□□□ -0.44
CUX1-218ENST00000560541 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■□□ 16.1
CUX1-218ENST00000560541 TMBIM4Q9HC24 238 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 NR2E1Q9Y466 385 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 HMGB1P1B2RPK0 211 aaPredicted RBP12.29□□□□□ -0.44
CUX1-218ENST00000560541 DDX3XO00571 662 aaKnown RBP eCLIP12.29□□□□□ -0.44
CUX1-218ENST00000560541 ASTN1O14525 1302 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 ZNF844Q08AG5 666 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 PPP4R3CPQ6ZMV5 832 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 FRMD5Q7Z6J6 570 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 GLYCTKQ8IVS8 523 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 CD302Q8IX05 232 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 SLC35C1Q96A29 364 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 TRIM51Q9BSJ1 452 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 RMI1Q9H9A7 625 aa12.29□□□□□ -0.44
CUX1-218ENST00000560541 SEPT11Q9NVA2 429 aaKnown RBP12.29□□□□□ -0.44
CUX1-218ENST00000560541 MEFVO15553 781 aaPredicted RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 SF3A3Q12874 501 aaKnown RBP eCLIP12.28□□□□□ -0.44
CUX1-218ENST00000560541 ZC2HC1CQ53FD0 456 aaPredicted RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 CDC42EP5Q6NZY7 148 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 ZC3H3Q8IXZ2 948 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 ETNPPLQ8TBG4 499 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 ACTRT1Q8TDG2 376 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 PBKQ96KB5 322 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 DNAJC18Q9H819 358 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 SIX2Q9NPC8 291 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 PLCB1Q9NQ66 1216 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 CHCHD3Q9NX63 227 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 TRAF3IP3Q9Y228 551 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 AHDC1Q5TGY3 1603 aaPredicted RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 PITPNM2Q9BZ72 1349 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 ZBTB39O15060 712 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 CHMP2AO43633 222 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 CALUO43852 315 aaPredicted RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 PPFIA2O75334 1257 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 COG2Q14746 738 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 SLFN13Q68D06 897 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 SLFN12Q8IYM2 578 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 H0YGN5 161 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 TBCAO75347 108 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 FGGP02679 453 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 NMT1P30419 496 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 GALCP54803 685 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 CTTNQ14247 550 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 IFI16Q16666 785 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 CRY2Q49AN0 593 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 ACCSLQ4AC99 568 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 WLSQ5T9L3 541 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 SYT2Q8N9I0 419 aaPredicted RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 LRRC4BQ9NT99 713 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 NOVA2Q9UNW9 492 aaKnown RBP12.28□□□□□ -0.44
CUX1-218ENST00000560541 NFS1Q9Y697 457 aa12.28□□□□□ -0.44
CUX1-218ENST00000560541 IGSF9BQ9UPX0 1349 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 EVI5O60447 810 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 OATP04181 439 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 HLA-DOAP06340 250 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 ZNF211Q13398 564 aaPredicted RBP12.27□□□□□ -0.44
CUX1-218ENST00000560541 CUL1Q13616 776 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 VPS36Q86VN1 386 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 DRAXINQ8NBI3 349 aaPredicted RBP12.27□□□□□ -0.44
CUX1-218ENST00000560541 ERMNQ8TAM6 284 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 LNX1Q8TBB1 728 aaPredicted RBP12.27□□□□□ -0.44
CUX1-218ENST00000560541 TBC1D31Q96DN5 1066 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 SWAP70Q9UH65 585 aa12.27□□□□□ -0.44
CUX1-218ENST00000560541 BZW2Q9Y6E2 419 aaKnown RBP12.27□□□□□ -0.44
CUX1-218ENST00000560541 SPDYE3A6NKU9 549 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 A6NNZ2 444 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 EML1O00423 815 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 BUB1BO60566 1050 aaPredicted RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 GDF11O95390 407 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 ZBTB48P10074 688 aaPredicted RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 RPA1P27694 616 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms