RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 L1TD1Q5T7N2 865 aaKnown RBP14.16□□□□□ -0.14
SHMT2-230ENST00000557427 BRF1Q92994 677 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 NECTIN4Q96NY8 510 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 RTP3Q9BQQ7 232 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 AAASQ9NRG9 546 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 RBM28Q9NW13 759 aaKnown RBP14.16□□□□□ -0.14
SHMT2-230ENST00000557427 ATP6V1DQ9Y5K8 247 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 HCFC2Q9Y5Z7 792 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 USP24Q9UPU5 2620 aa14.16□□□□□ -0.14
SHMT2-230ENST00000557427 TBKBP1A7MCY6 615 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 MEIS2O14770 477 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 IBSPP21815 317 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 CDC27P30260 824 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 PLCB3Q01970 1234 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 SP4Q02446 784 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 ITIH3Q06033 890 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 PPFIA1Q13136 1202 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 NEDD9Q14511 834 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 GRIK4Q16099 956 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 UBE2SQ16763 222 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 TPRNQ4KMQ1 711 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 CES5AQ6NT32 575 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 RSPH3Q86UC2 560 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 C12orf76Q8N812 135 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 NECAB1Q8N987 351 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 TDRD5Q8NAT2 981 aaKnown RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 RIN2Q8WYP3 895 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 MRPS27Q92552 414 aaKnown RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 RUBCNQ92622 972 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 CASP10Q92851 521 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 GTF3C6Q969F1 213 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 INPP4AQ96PE3 977 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 FAM217BQ9NTX9 383 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-230ENST00000557427 TUBE1Q9UJT0 475 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 LZTS1Q9Y250 596 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 SQORQ9Y6N5 450 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 LOXHD1Q8IVV2 1947 aa14.15□□□□□ -0.14
SHMT2-230ENST00000557427 PFKFB2O60825 505 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 F13A1P00488 732 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 SARSP49591 514 aaKnown RBP14.14□□□□□ -0.15
SHMT2-230ENST00000557427 METAP2P50579 478 aaKnown RBP eCLIP14.14□□□□□ -0.152e-6■■■■□ 21
SHMT2-230ENST00000557427 TMEM62Q0P6H9 643 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 TMEM266Q2M3C6 531 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 SIX5Q8N196 739 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 TMEM87AQ8NBN3 555 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 HINFPQ9BQA5 517 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 LLPHQ9BRT6 129 aaKnown RBP14.14□□□□□ -0.15
SHMT2-230ENST00000557427 FAM49AQ9H0Q0 323 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-230ENST00000557427 ENTPD7Q9NQZ7 604 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 LRFN2Q9ULH4 789 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 MTMR6Q9Y217 621 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 CHD8Q9HCK8 2581 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 IGSF9BQ9UPX0 1349 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 FANCMQ8IYD8 2048 aa14.14□□□□□ -0.15
SHMT2-230ENST00000557427 PIK3CDO00329 1044 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 CLASP2O75122 1294 aaKnown RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 PRPF40AO75400 957 aaKnown RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 EOMESO95936 686 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 MBD3O95983 291 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 MARK3P27448 753 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 TCF7P36402 384 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 MTHFRP42898 656 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 ATXN1P54253 815 aaKnown RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 NAPAP54920 295 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 EVCP57679 992 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 FUT2Q10981 343 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 FOXD4L5Q5VV16 416 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 WWC2Q6AWC2 1192 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 LRRC55Q6ZSA7 311 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 PLCD3Q8N3E9 789 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 SUMF1Q8NBK3 374 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 FOXD4L4Q8WXT5 416 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 GZF1Q9H116 711 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 NGRNQ9NPE2 291 aaKnown RBP14.13□□□□□ -0.15
SHMT2-230ENST00000557427 USTQ9Y2C2 406 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 PCDHB7Q9Y5E2 793 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 TRPV2Q9Y5S1 764 aa14.13□□□□□ -0.15
SHMT2-230ENST00000557427 GSTTP1A0A1W2PQM5 241 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 KRBA1A5PL33 1030 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 GOLGA6L3A6NEY3 463 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 C2orf71A6NGG8 1288 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 NARSO43776 548 aaKnown RBP14.12□□□□□ -0.15
SHMT2-230ENST00000557427 FGFR1P11362 822 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 PBX3P40426 434 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 IGBP1P78318 339 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 CCT2P78371 535 aaKnown RBP14.12□□□□□ -0.15
SHMT2-230ENST00000557427 PAK2Q13177 524 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 TDGQ13569 410 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 GNPTABQ3T906 1256 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 RARS2Q5T160 578 aaKnown RBP14.12□□□□□ -0.15
SHMT2-230ENST00000557427 IER5Q5VY09 327 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 KIAA1841Q6NSI8 718 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 MRPL43Q8N983 215 aaKnown RBP14.12□□□□□ -0.15
SHMT2-230ENST00000557427 ZNF274Q96GC6 653 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-230ENST00000557427 CYP26B1Q9NR63 512 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 PCDHA6Q9UN73 950 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 DUSP12Q9UNI6 340 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 PCDHA8Q9Y5H6 950 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 FRMPD4Q14CM0 1322 aa14.12□□□□□ -0.15
SHMT2-230ENST00000557427 CNTNAP5Q8WYK1 1306 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms