RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 PUM1Q14671 1186 aaKnown RBP eCLIP10.64□□□□□ -0.71
SYNE2-224ENST00000557024 ATAT1Q5SQI0 421 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 KIAA1841Q6NSI8 718 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 MTHFD1LQ6UB35 978 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 CWC27Q6UX04 472 aaKnown RBP10.64□□□□□ -0.71
SYNE2-224ENST00000557024 NME8Q8N427 588 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 CYP2W1Q8TAV3 490 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 FEZF2Q8TBJ5 459 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 RTP3Q9BQQ7 232 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 TMEM117Q9H0C3 514 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 OSBPL3Q9H4L5 887 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 JPH1Q9HDC5 661 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-224ENST00000557024 CYP26B1Q9NR63 512 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 SPG21Q9NZD8 308 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 PCDHGA10Q9Y5H3 936 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 DOCK5Q9H7D0 1870 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 DNAH14Q0VDD8 3507 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 PIK3CDO00329 1044 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 GPR182O15218 404 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 KLRC1P26715 233 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 FAM189BP81408 668 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 TDGQ13569 410 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 TTC22Q5TAA0 569 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 TMC5Q6UXY8 1006 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 KIAA0319LQ8IZA0 1049 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 LRRC43Q8N309 656 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 RIN2Q8WYP3 895 aaPredicted RBP10.63□□□□□ -0.71
SYNE2-224ENST00000557024 TNPO1Q92973 898 aaKnown RBP10.63□□□□□ -0.71
SYNE2-224ENST00000557024 CASD1Q96PB1 797 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 SEMA4AQ9H3S1 761 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 RNF19AQ9NV58 838 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 SLC9A2Q9UBY0 812 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 USTQ9Y2C2 406 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 UBIAD1Q9Y5Z9 338 aa10.63□□□□□ -0.71
SYNE2-224ENST00000557024 KMT2BQ9UMN6 2715 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-224ENST00000557024 IFIT3O14879 490 aaKnown RBP10.62□□□□□ -0.71
SYNE2-224ENST00000557024 CXCL14O95715 111 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 EPCAMP16422 314 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 STAT5BP51692 787 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 ACTR2P61160 394 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 UBE2SQ16763 222 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 KIZQ2M2Z5 673 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 TSR1Q2NL82 804 aaKnown RBP10.62□□□□□ -0.71
SYNE2-224ENST00000557024 ODR4Q5SWX8 454 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 FAM228AQ86W67 206 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 ABI1Q8IZP0 508 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 SLC39A11Q8N1S5 342 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 DCLK2Q8N568 766 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 TMEM87AQ8NBN3 555 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 RNF169Q8NCN4 708 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 AUTS2Q8WXX7 1259 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 OSMRQ99650 979 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 DSCC1Q9BVC3 393 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 ELAC1Q9H777 363 aaKnown RBP10.62□□□□□ -0.71
SYNE2-224ENST00000557024 JADE2Q9NQC1 790 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 DIAPH3Q9NSV4 1193 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 DZANK1Q9NVP4 752 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 DUSP12Q9UNI6 340 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 MYH6P13533 1939 aa10.62□□□□□ -0.71
SYNE2-224ENST00000557024 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 NT5C1B-RDH14C9J2C7 533 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 HOXA2O43364 376 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 NARSO43776 548 aaKnown RBP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 METAP2P50579 478 aaKnown RBP eCLIP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 TROAPQ12815 778 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 DSC3Q14574 896 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 FAM43BQ6ZT52 329 aaPredicted RBP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 PLPPR4Q7Z2D5 763 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 ACSF2Q96CM8 615 aaPredicted RBP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 RRP36Q96EU6 259 aaKnown RBP10.61□□□□□ -0.71
SYNE2-224ENST00000557024 EPAS1Q99814 870 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 DLL3Q9NYJ7 618 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 LAMA4Q16363 1823 aa10.61□□□□□ -0.71
SYNE2-224ENST00000557024 ERICH2A1L162 156 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 VTNP04004 478 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 CFHP08603 1231 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 RFX1P22670 979 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 CRYBB1P53674 252 aaPredicted RBP10.6□□□□□ -0.71
SYNE2-224ENST00000557024 EMP3P54852 163 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 RSPO4Q2I0M5 234 aaPredicted RBP10.6□□□□□ -0.71
SYNE2-224ENST00000557024 CLLU1OSQ5K130 101 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 SPECC1Q5M775 1068 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 CCDC149Q6ZUS6 474 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 OTOP3Q7RTS5 596 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 CABP7Q86V35 215 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 VPS52Q8N1B4 723 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 RUBCNQ92622 972 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 SDF4Q9BRK5 362 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 PSTPIP2Q9H939 334 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 KCNK12Q9HB15 430 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 KCNH7Q9NS40 1196 aa10.6□□□□□ -0.71
SYNE2-224ENST00000557024 SEC63Q9UGP8 760 aaKnown RBP10.6□□□□□ -0.71
SYNE2-224ENST00000557024 ZFHX4Q86UP3 3567 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 KRBA1A5PL33 1030 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 SPDYE3A6NKU9 549 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 BACH1O14867 736 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 MAFGO15525 162 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 HBP1O60381 514 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 NUDT7P0C024 238 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 ALDH7A1P49419 539 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms