RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SERTAD1Q9UHV2 236 aa16.15■□□□□ 0.18
SHMT2-208ENST00000553868 MED19A0JLT2 244 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-208ENST00000553868 POTEMA6NI47 508 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 PP2D1A8MPX8 630 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 PSMD10O75832 226 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 CCDC192P0DO97 292 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 ARP10275 920 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 PPP2R5CQ13362 524 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 GSE1Q14687 1217 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 KARSQ15046 597 aaKnown RBP16.14■□□□□ 0.17
SHMT2-208ENST00000553868 TIGD5Q53EQ6 642 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 IQSEC1Q6DN90 963 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 NCAPH2Q6IBW4 605 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 RPAINQ86UA6 219 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 KCTD17Q8N5Z5 321 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 PURBQ96QR8 312 aaKnown RBP16.14■□□□□ 0.17
SHMT2-208ENST00000553868 AGO4Q9HCK5 861 aaKnown RBP16.14■□□□□ 0.17
SHMT2-208ENST00000553868 TRPC6Q9Y210 931 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 SCN10AQ9Y5Y9 1956 aa16.14■□□□□ 0.17
SHMT2-208ENST00000553868 PRR23AA6NEV1 266 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 ASB14A6NK59 587 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 MBTPS2O43462 519 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 ACTN4O43707 911 aaKnown RBP16.13■□□□□ 0.17
SHMT2-208ENST00000553868 EDNRBP24530 442 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 CDC25AP30304 524 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 CCT6AP40227 531 aaKnown RBP16.13■□□□□ 0.17
SHMT2-208ENST00000553868 CHMP4BP1P59074 171 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 BFSP2Q13515 415 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 PTPROQ16827 1216 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 VAV3Q9UKW4 847 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 Q9Y3F1 56 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 ATG2AQ2TAZ0 1938 aa16.13■□□□□ 0.17
SHMT2-208ENST00000553868 GVINP1Q7Z2Y8 2422 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 A0A087X0B3 334 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 NBNO60934 754 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 SMC2O95347 1197 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 MYL1P05976 194 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 PLCG1P19174 1290 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 MUTP22033 750 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 ZXDAP98168 799 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 AMPD3Q01432 767 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 SPIRE1Q08AE8 756 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 POSTNQ15063 836 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 E2F4Q16254 413 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 EPC2Q52LR7 807 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 HYIQ5T013 277 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 CNKSR3Q6P9H4 555 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 KCNV1Q6PIU1 500 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 CKAP2LQ8IYA6 745 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 POP1Q99575 1024 aaKnown RBP16.12■□□□□ 0.17
SHMT2-208ENST00000553868 MTG1Q9BT17 334 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-208ENST00000553868 MMTAG2Q9BU76 263 aaKnown RBP16.12■□□□□ 0.17
SHMT2-208ENST00000553868 LRRC27Q9C0I9 530 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 TSPY26PQ9H489 355 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 KIAA1468Q9P260 1216 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 NOD1Q9Y239 953 aa16.12■□□□□ 0.17
SHMT2-208ENST00000553868 PROB1E7EW31 1015 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 AVPR2P30518 371 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 ICAM3P32942 547 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 KRT76Q01546 638 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 GPM6BQ13491 265 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.11■□□□□ 0.174e-7■□□□□ 9.3
SHMT2-208ENST00000553868 GIMAP8Q8ND71 665 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-208ENST00000553868 RDM1Q8NG50 284 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 GJA10Q969M2 543 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 ZFP91Q96JP5 570 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-208ENST00000553868 CTAGE1Q96RT6 745 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 POLR3CQ9BUI4 534 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-208ENST00000553868 NSUN3Q9H649 340 aaKnown RBP16.11■□□□□ 0.17
SHMT2-208ENST00000553868 TUFT1Q9NNX1 390 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 KMT2BQ9UMN6 2715 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-208ENST00000553868 NFASCO94856 1347 aa16.11■□□□□ 0.17
SHMT2-208ENST00000553868 SPATA31C2B4DYI2 1134 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 CAVIN2O95810 425 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 RPA1P27694 616 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 SFNP31947 248 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 JAK3P52333 1124 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 EPHA7Q15375 998 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 TMEM119Q4V9L6 283 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 PDXDC2PQ6P474 469 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 MORC4Q8TE76 937 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 SMARCE1Q969G3 411 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 PAGE5Q96GU1 130 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 NCOR2Q9Y618 2525 aa16.1■□□□□ 0.17
SHMT2-208ENST00000553868 LCTP09848 1927 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 DMXL1Q9Y485 3027 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 H3BNC9 293 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 TBX10O75333 385 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 TGFB3P10600 412 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 GTF2F1P35269 517 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 TYRO3Q06418 890 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 SEMA3FQ13275 785 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 MKRN4PQ13434 485 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 STX1AQ16623 288 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 PTGISQ16647 500 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 CTC1Q2NKJ3 1217 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 DUSP28Q4G0W2 176 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 ZNF746Q6NUN9 644 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-208ENST00000553868 NFRKBQ6P4R8 1299 aa16.09■□□□□ 0.17
SHMT2-208ENST00000553868 LRRC8DQ7L1W4 858 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms