RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 CCDC170Q8IYT3 715 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 CYP2W1Q8TAV3 490 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 NEK9Q8TD19 979 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 TMEM174Q8WUU8 243 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 CPLX3Q8WVH0 158 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 GJA10Q969M2 543 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 ERO1AQ96HE7 468 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 TRERF1Q96PN7 1200 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 NACC1Q96RE7 527 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 EIF2AK1Q9BQI3 630 aaKnown RBP6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 OCSTAMPQ9BR26 566 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 PDCL3Q9H2J4 239 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 NDST4Q9H3R1 872 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 AS3MTQ9HBK9 375 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 OLFML3Q9NRN5 406 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 SEL1LQ9UBV2 794 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 FKBPLQ9UIM3 349 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 HACL1Q9UJ83 578 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 FAM184BQ9ULE4 1060 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 MKL2Q9ULH7 1088 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 PPP1R9AQ9ULJ8 1098 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 SIK3Q9Y2K2 1263 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 COL4A3BPQ9Y5P4 624 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 UBIAD1Q9Y5Z9 338 aa6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 EPN1Q9Y6I3 576 aaPredicted RBP6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 ZNFX1Q9P2E3 1918 aaKnown RBP6.65□□□□□ -1.34
VIPAS39-204ENST00000553576 WDR90Q96KV7 1748 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 LOC285556D6RIA3 1793 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 SOWAHDA6NJG2 315 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 B4DLN1 442 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PDXKO00764 312 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 ATP2A1O14983 1001 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 EIF3DO15371 548 aaKnown RBP eCLIP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 MAFGO15525 162 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 DHX15O43143 795 aaKnown RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 ZBED4O75132 1171 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 LYPLA2O95372 231 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 SLU7O95391 586 aaKnown RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PTPRAP18433 802 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 ITGB7P26010 798 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 STAT3P40763 770 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF131P52739 623 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 OAZ1P54368 228 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 MCCD1P59942 119 aaPredicted RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 TUBB4BP68371 445 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PPP2R3AQ06190 1150 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 KNOP1Q1ED39 458 aaKnown RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 HERC4Q5GLZ8 1057 aaPredicted RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 NOL9Q5SY16 702 aaKnown RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 FKBP15Q5T1M5 1219 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 NBPF12Q5TAG4 269 aaPredicted RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 LRCH2Q5VUJ6 765 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PCNX4Q63HM2 1172 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 NCAPH2Q6IBW4 605 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 CCDC174Q6PII3 467 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 FRMD5Q7Z6J6 570 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 SCYL3Q8IZE3 742 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF397Q8NF99 534 aaPredicted RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 SCFD1Q8WVM8 642 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 SYN2Q92777 582 aaPredicted RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 HPS3Q969F9 1004 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 NUCKS1Q9H1E3 243 aaKnown RBP6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 JADE2Q9NQC1 790 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 AGPAT5Q9NUQ2 364 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 FBXO28Q9NVF7 368 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 CCPG1Q9ULG6 757 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PLAGL2Q9UPG8 496 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 BCS1LQ9Y276 419 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 MYPNQ86TC9 1320 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 PAPPA2Q9BXP8 1791 aa6.64□□□□□ -1.35
VIPAS39-204ENST00000553576 EIF3CLB5ME19 914 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 SHISA8B8ZZ34 492 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 IPO5O00410 1097 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 TRAF5O00463 557 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 CETN3O15182 167 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 GAS7O60861 476 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 UBE4BO95155 1302 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 NDUFA10O95299 355 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 LCA5LO95447 670 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 P4HBP07237 508 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 LCTP09848 1927 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ARP10275 920 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 MAPTP10636 758 aaKnown RBP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ITGB5P18084 799 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 VCAM1P19320 739 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 GUCY2CP25092 1073 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 CASQ1P31415 396 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 HOXD13P35453 343 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 RAB15P59190 212 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 KRT83P78385 493 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 PABPC4Q13310 644 aaKnown RBP eCLIP6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ADAM9Q13443 819 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 MYBPC2Q14324 1141 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 MTF1Q14872 753 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 LRRC41Q15345 812 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 NBPF20Q3BBV1 942 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 TKFCQ3LXA3 575 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 SH3D19Q5HYK7 790 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 LCE3BQ5TA77 95 aa6.63□□□□□ -1.35
VIPAS39-204ENST00000553576 ARID2Q68CP9 1835 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms