RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ZNF396Q96N95 335 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-207ENST00000542790 DHX33Q9H6R0 707 aaKnown RBP13.84□□□□□ -0.19
VPS33A-207ENST00000542790 GINS2Q9Y248 185 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 CLIC4Q9Y696 253 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 SLC4A7Q9Y6M7 1214 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 GAS2O43903 313 aaKnown RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 DGAT1O75907 488 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 VTNP04004 478 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 GHRP10912 638 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 RARRES1P49788 294 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 CRYBB1P53674 252 aaPredicted RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 LPIN1Q14693 890 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 TSHZ1Q6ZSZ6 1077 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 KCTD17Q8N5Z5 321 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 PIGOQ8TEQ8 1089 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 IFIH1Q9BYX4 1025 aaKnown RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 CXXC1Q9P0U4 656 aaPredicted RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 SUCLA2Q9P2R7 463 aaPredicted RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 DBR1Q9UK59 544 aaKnown RBP13.83□□□□□ -0.2
VPS33A-207ENST00000542790 DNAH12Q6ZR08 3092 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 LTBP2Q14767 1821 aa13.83□□□□□ -0.2
VPS33A-207ENST00000542790 CEP290O15078 2479 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 GPR32O75388 356 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 F13A1P00488 732 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 LONP1P36776 959 aaKnown RBP13.82□□□□□ -0.2
VPS33A-207ENST00000542790 KCNJ6P48051 423 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 NLRP11P59045 1033 aaKnown RBP13.82□□□□□ -0.2
VPS33A-207ENST00000542790 CEBPZQ03701 1054 aaKnown RBP13.82□□□□□ -0.2
VPS33A-207ENST00000542790 PTPAQ15257 358 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 KIZQ2M2Z5 673 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 ODR4Q5SWX8 454 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 FOXD4L5Q5VV16 416 aaPredicted RBP13.82□□□□□ -0.2
VPS33A-207ENST00000542790 PHOSPHO2Q8TCD6 241 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 TCP11Q8WWU5 503 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 FOXD4L4Q8WXT5 416 aaPredicted RBP13.82□□□□□ -0.2
VPS33A-207ENST00000542790 OSBPL7Q9BZF2 842 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 KIAA1024Q9UPX6 916 aa13.82□□□□□ -0.2
VPS33A-207ENST00000542790 A0A087WWV3 80 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 PP2D1A8MPX8 630 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ASAP2O43150 1006 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SLC26A4O43511 780 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 RPS6KA5O75582 802 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ATP2A2P16615 1042 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 CDC25AP30304 524 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 UBA7P41226 1012 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 NASPP49321 788 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 GPC3P51654 580 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SMAD3P84022 425 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 PAK2Q13177 524 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 DRP2Q13474 957 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 EMC2Q15006 297 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SLC39A14Q15043 492 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ATL3Q6DD88 541 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 RHPN2Q8IUC4 686 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 NLRP7Q8WX94 980 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 PSPC1Q8WXF1 523 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SCLT1Q96NL6 688 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 USP28Q96RU2 1077 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SLC9A7Q96T83 725 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 OSMRQ99650 979 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 MTRQ99707 1265 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 MMTAG2Q9BU76 263 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 NT5C3AQ9H0P0 336 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ADAMTS10Q9H324 1103 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 AGO3Q9H9G7 860 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 CDHR5Q9HBB8 845 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ATP6V0A4Q9HBG4 840 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 DDX19AQ9NUU7 478 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 PADI3Q9ULW8 664 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 DNM3Q9UQ16 869 aa13.81□□□□□ -0.2
VPS33A-207ENST00000542790 SRPRBQ9Y5M8 271 aaKnown RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 MORC2Q9Y6X9 1032 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-207ENST00000542790 ARHGEF35A5YM69 484 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 GPR182O15218 404 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 EIF4BP23588 611 aaKnown RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 CD52P31358 61 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 WDR5P61964 334 aaKnown RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 PKP1Q13835 747 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 ZRSR1Q15695 479 aaKnown RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 ECM1Q16610 540 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 TCTN1Q2MV58 587 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 ZNF410Q86VK4 478 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 MCPH1Q8NEM0 835 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 PRPF31Q8WWY3 499 aaKnown RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 TMEM143Q96AN5 459 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 CDK5RAP3Q96JB5 506 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 PPP1R16BQ96T49 567 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 FTHL17Q9BXU8 183 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 GCOM2Q9BZD3 368 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 BHMT2Q9H2M3 363 aa13.8□□□□□ -0.2
VPS33A-207ENST00000542790 TFIP11Q9UBB9 837 aaKnown RBP13.8□□□□□ -0.2
VPS33A-207ENST00000542790 SOX1O00570 391 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 EYA4O95677 639 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 BRD1O95696 1058 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 AMHP03971 560 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 MARCKSP29966 332 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 FXR1P51114 621 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 NFX1Q12986 1120 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms