RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 ATRNO75882 1429 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 ZEB2O60315 1214 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 GYPCP04921 128 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 SMARCA1P28370 1054 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 NR1I3Q14994 352 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 ECM1Q16610 540 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 TREML2Q5T2D2 321 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 TC2NQ8N9U0 490 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 DAGLBQ8NCG7 672 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 KIAA0895Q8NCT3 520 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 MCPH1Q8NEM0 835 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 SEPT1Q8WYJ6 367 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 WNK4Q96J92 1243 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 SPATC1LQ9H0A9 340 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 PLCB1Q9NQ66 1216 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 SMARCAL1Q9NZC9 954 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 DDX41Q9UJV9 622 aaKnown RBP11□□□□□ -0.65
TOP3A-208ENST00000542570 DUSP10Q9Y6W6 482 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 FAM208AQ9UK61 1670 aaKnown RBP11□□□□□ -0.65
TOP3A-208ENST00000542570 CACNA1FO60840 1977 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 HGSO14964 777 aaPredicted RBP11□□□□□ -0.65
TOP3A-208ENST00000542570 VAV2P52735 878 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 CCZ1BP86790 482 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 CCZ1P86791 482 aaPredicted RBP11□□□□□ -0.65
TOP3A-208ENST00000542570 KCNB1Q14721 858 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 TWF2Q6IBS0 349 aaKnown RBP11□□□□□ -0.65
TOP3A-208ENST00000542570 PLVAPQ9BX97 442 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 VPS18Q9P253 973 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 ASIC3Q9UHC3 531 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 AMFRQ9UKV5 643 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 FAM184BQ9ULE4 1060 aa11□□□□□ -0.65
TOP3A-208ENST00000542570 HPDP32754 393 aaPredicted RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 NSFP46459 744 aaKnown RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 CASP5P51878 434 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 C2orf54Q08AI8 447 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TAF12Q16514 161 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SEL1L2Q5TEA6 688 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SLC30A5Q8TAD4 765 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ADGRG1Q9Y653 693 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SLITRK3O94933 977 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ITGB5P18084 799 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SFNP31947 248 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 DYNLT1P63172 113 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ZNF211Q13398 564 aaPredicted RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TFDP1Q14186 410 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TRIM58Q8NG06 486 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 WDR18Q9BV38 432 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 MOV10L1Q9BXT6 1211 aaKnown RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 PDE11AQ9HCR9 933 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 FHOD1Q9Y613 1164 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 A0A1B0GTH6 734 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 KRIT1O00522 736 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 MFAP3P55082 362 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 GIT2Q14161 759 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 LIN9Q5TKA1 542 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TATDN1Q6P1N9 297 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SHISA4Q96DD7 197 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 KRT12Q99456 494 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 MED10Q9BTT4 135 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 PXMP2Q9NR77 195 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 SUCLA2Q9P2R7 463 aaPredicted RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TCHHQ07283 1943 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ABCC6O95255 1503 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 PDHXO00330 501 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 CYP26A1O43174 497 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TFRCP02786 760 aaKnown RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 FGRP09769 529 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 FGFR4P22455 802 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ORC1Q13415 861 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TMEM132BQ14DG7 1078 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 PGM5Q15124 567 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 TRIP13Q15645 432 aaPredicted RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 CDO1Q16878 200 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 CBWD2Q8IUF1 395 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 OR6J1Q8NGC5 347 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 ZBTB10Q96DT7 871 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 DNAJC17Q9NVM6 304 aaKnown RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 HSPBP1Q9NZL4 362 aa10.99□□□□□ -0.65
TOP3A-208ENST00000542570 AGO2Q9UKV8 859 aaKnown RBP10.99□□□□□ -0.65
TOP3A-208ENST00000542570 PARP4Q9UKK3 1724 aaKnown RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 PHRF1Q9P1Y6 1649 aaKnown RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 RRP9O43818 475 aaKnown RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 DSG3P32926 999 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 GNASQ5JWF2 1037 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 PNMA8AQ86V59 439 aaPredicted RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 SYT2Q8N9I0 419 aaPredicted RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 SCFD1Q8WVM8 642 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 UPF1Q92900 1129 aaKnown RBP eCLIP10.98□□□□□ -0.659e-9■■■■■ 37.2
TOP3A-208ENST00000542570 BPIFA3Q9BQP9 254 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 RBAKQ9NYW8 714 aaPredicted RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 STRCP1A6NGW2 1772 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 H0YHG0 523 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 TNNC1P63316 161 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 UAP1Q16222 522 aaPredicted RBP10.98□□□□□ -0.65
TOP3A-208ENST00000542570 CFAP221Q4G0U5 840 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 XKR3Q5GH77 459 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 OTOP1Q7RTM1 612 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 MKL1Q969V6 931 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 HAUS1Q96CS2 278 aa10.98□□□□□ -0.65
TOP3A-208ENST00000542570 RPF1Q9H9Y2 349 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms