RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MCM3P25205 808 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 ARHGAP25P42331 645 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 GMPSP49915 693 aaPredicted RBP8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC92Q53HC0 331 aaPredicted RBP8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 RRAGBQ5VZM2 374 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 HOOK3Q86VS8 718 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 MPP4Q96JB8 637 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 CUEDC2Q9H467 287 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 SEL1LQ9UBV2 794 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF541Q9H0D2 1346 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 PLA2G6O60733 806 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 UBA7P41226 1012 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 GRB10Q13322 594 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM83BQ5T0W9 1011 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 MICALL2Q8IY33 904 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 SH2D3CQ8N5H7 860 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 GLMNQ92990 594 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 CLIP3Q96DZ5 547 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 RSRC1Q96IZ7 334 aaKnown RBP8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 PNMA5Q96PV4 448 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 PANX2Q96RD6 677 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 ANO3Q9BYT9 981 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 TRIM4Q9C037 500 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 VCPKMTQ9H867 229 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 MAGEF1Q9HAY2 307 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 KCNMB3Q9NPA1 279 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 SPDYE3A6NKU9 549 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 ENO4A6NNW6 628 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 FSBPO95073 299 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 EZRP15311 586 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 TXKP42681 527 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 STAT2P52630 851 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 AP3B2Q13367 1082 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 CDKAL1Q5VV42 579 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 ARHGAP22Q7Z5H3 698 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 FBXO11Q86XK2 927 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 UPF1Q92900 1129 aaKnown RBP eCLIP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 VMP1Q96GC9 406 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 PLIN2Q99541 437 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 BLOC1S4Q9NUP1 217 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 DDX20Q9UHI6 824 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 DDX25Q9UHL0 483 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 TFR2Q9UP52 801 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 PIK3CDO00329 1044 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 COBLO75128 1261 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 MATR3P43243 847 aaKnown RBP eCLIP8.68□□□□□ -1.021e-6■■■□□ 17.1
PDLIM5-221ENST00000542407 KCNB1Q14721 858 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 SNCBQ16143 134 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 TSR1Q2NL82 804 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 TMEM119Q4V9L6 283 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF658Q5TYW1 1059 aaPredicted RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 AGAP9Q5VTM2 703 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 MOXD1Q6UVY6 613 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 SAMD7Q7Z3H4 446 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC84Q86UT8 332 aaPredicted RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC13Q8IYE1 715 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 ADAMTS19Q8TE59 1207 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 SLC35B4Q969S0 331 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 LENG9Q96B70 501 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 ARL8AQ96BM9 186 aa8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 DNAAF2Q9NVR5 837 aaKnown RBP8.68□□□□□ -1.02
PDLIM5-221ENST00000542407 DICER1Q9UPY3 1922 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 DYTNA2CJ06 578 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 POTEMA6NI47 508 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 USP11P51784 963 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CLCN2P51788 898 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 NR1I3Q14994 352 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SPATA1Q5VX52 437 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 PEX5LQ8IYB4 626 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 GIMAP1Q8WWP7 306 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 GJA10Q969M2 543 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 C7orf25Q9BPX7 421 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 NUDT12Q9BQG2 462 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SLC40A1Q9NP59 571 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 DOCK1Q14185 1865 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 RHOBTB3O94955 611 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SREBF1P36956 1147 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CCT6AP40227 531 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 GUCY1A3Q02108 690 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 C2orf54Q08AI8 447 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 ECM1Q16610 540 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 USH1GQ495M9 461 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CCNI2Q6ZMN8 369 aaPredicted RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 ETNPPLQ8TBG4 499 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 NAA15Q9BXJ9 866 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 TRIM9Q9C026 710 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 COMMD8Q9NX08 183 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 LRWD1Q9UFC0 647 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 HACL1Q9UJ83 578 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 GDAQ9Y2T3 454 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SPO11Q9Y5K1 396 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SAR1BQ9Y6B6 198 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 RBBP6Q7Z6E9 1792 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SMCHD1A6NHR9 2005 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 MFAP3LO75121 409 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 FGFR1OPO95684 399 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 ATP1A1P05023 1023 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 ASNSP08243 561 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 RPL13P26373 211 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms