RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 KRBA1A5PL33 1030 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 C2orf71A6NGG8 1288 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 SPATA31C2B4DYI2 1134 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 ACTN4O43707 911 aaKnown RBP9.49□□□□□ -0.89
CD44-232ENST00000531118 KINO60870 393 aaKnown RBP9.49□□□□□ -0.89
CD44-232ENST00000531118 STAM2O75886 525 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 FGFR1P11362 822 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 HAND2P61296 217 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 IGBP1P78318 339 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 LMNB2Q03252 620 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 TBC1D8BQ0IIM8 1120 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 SPECC1Q5M775 1068 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 IER5Q5VY09 327 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 KANK3Q6NY19 840 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 FCHSD1Q86WN1 690 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 LRRC43Q8N309 656 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 SAMD3Q8N6K7 520 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 PI4K2BQ8TCG2 481 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 ACSF2Q96CM8 615 aaPredicted RBP9.49□□□□□ -0.89
CD44-232ENST00000531118 ZNF558Q96NG5 402 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 ZKSCAN3Q9BRR0 538 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 RTKNQ9BST9 563 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 KCNK12Q9HB15 430 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 C1orf112Q9NSG2 853 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 DLGAP2Q9P1A6 1054 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 PCDHA1Q9Y5I3 950 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 TTC41PQ6P2S7 1318 aa9.49□□□□□ -0.89
CD44-232ENST00000531118 COL4A3Q01955 1670 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 DCDC2BA2VCK2 349 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 PRR5-ARHGAP8B1AHC4 643 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 C9IYK1 514 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 GCOM1H8Y6P7 765 aaPredicted RBP9.48□□□□□ -0.89
CD44-232ENST00000531118 SPTLC1O15269 473 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 PARP1P09874 1014 aaKnown RBP9.48□□□□□ -0.89
CD44-232ENST00000531118 POLR2MP0CAP2 368 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 PCP11498 1178 aaKnown RBP9.48□□□□□ -0.89
CD44-232ENST00000531118 EPCAMP16422 314 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 CA8P35219 290 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 USP46P62068 366 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 ARHGAP8P85298 464 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 ACAP1Q15027 740 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 ATAT1Q5SQI0 421 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 KCNT2Q6UVM3 1135 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 OTOP3Q7RTS5 596 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 DGKHQ86XP1 1220 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 CELF4Q9BZC1 486 aaKnown RBP9.48□□□□□ -0.89
CD44-232ENST00000531118 KAT14Q9H8E8 782 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 VAT1LQ9HCJ6 419 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 ERAP1Q9NZ08 941 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 CA14Q9ULX7 337 aa9.48□□□□□ -0.89
CD44-232ENST00000531118 IGF2RP11717 2491 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 DENND3A2RUS2 1198 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 ZBTB5O15062 677 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 FGAP02671 866 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 DCNP07585 359 aaKnown RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 NFX1Q12986 1120 aaKnown RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 TMC5Q6UXY8 1006 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 MFSD6Q6ZSS7 791 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 SLC24A5Q71RS6 500 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 C1orf210Q8IVY1 113 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 SLC39A11Q8N1S5 342 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 GPR161Q8N6U8 529 aaKnown RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 MRPL43Q8N983 215 aaKnown RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 ESR2Q92731 530 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 MTMR8Q96EF0 704 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 CHAMP1Q96JM3 812 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 ADAM2Q99965 735 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 SENP7Q9BQF6 1050 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 TMEM117Q9H0C3 514 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 SFXN1Q9H9B4 322 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 ATP6V0A4Q9HBG4 840 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 RGS18Q9NS28 235 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 RNF19AQ9NV58 838 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 TMEM161AQ9NX61 479 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 RTEL1Q9NZ71 1219 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 IGSF9Q9P2J2 1179 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 WNT16Q9UBV4 365 aa9.47□□□□□ -0.89
CD44-232ENST00000531118 SMG5Q9UPR3 1016 aaKnown RBP9.47□□□□□ -0.89
CD44-232ENST00000531118 GSTTP1A0A1W2PQM5 241 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 RRN3P2A6NIE6 340 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 RPS6KA5O75582 802 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 INSRRP14616 1297 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 KCNA2P16389 499 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 KRT76Q01546 638 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 KRT17Q04695 432 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 LRRC55Q6ZSA7 311 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 HOMER1Q86YM7 354 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 MAML2Q8IZL2 1156 aaPredicted RBP9.46□□□□□ -0.9
CD44-232ENST00000531118 STAG2Q8N3U4 1231 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 TRAPPC12Q8WVT3 735 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 TMEM40Q8WWA1 233 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 GLG1Q92896 1179 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 CASD1Q96PB1 797 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 ZBP1Q9H171 429 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 RNF41Q9H4P4 317 aaPredicted RBP9.46□□□□□ -0.9
CD44-232ENST00000531118 ARHGEF3Q9NR81 526 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 SPG21Q9NZD8 308 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 USP18Q9UMW8 372 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 NOC2LQ9Y3T9 749 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms