RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SYCE2Q6PIF2 218 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 KCNT2Q6UVM3 1135 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 ECHDC2Q86YB7 292 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 KCNB2Q92953 911 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 BRF1Q92994 677 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 ZNF668Q96K58 619 aaPredicted RBP26.66■■□□□ 1.86
CPSF1-202ENST00000527827 MAP7D2Q96T17 732 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 PUF60Q9UHX1 559 aaKnown RBP26.66■■□□□ 1.86
CPSF1-202ENST00000527827 HIDE1A8MVS5 230 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 EIF4BP23588 611 aaKnown RBP26.65■■□□□ 1.86
CPSF1-202ENST00000527827 TMOD1P28289 359 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 TECP42680 631 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 LRRC43Q8N309 656 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 PHKBQ93100 1093 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 ZNF558Q96NG5 402 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 ENTPD7Q9NQZ7 604 aa26.65■■□□□ 1.86
CPSF1-202ENST00000527827 WDR64B1ANS9 1081 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 MSH4O15457 936 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 CDC45O75419 566 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 OATP04181 439 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 ZSCAN20P17040 1043 aaPredicted RBP26.64■■□□□ 1.86
CPSF1-202ENST00000527827 NTRK3Q16288 839 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 UGCGQ16739 394 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 ZNF710Q8N1W2 664 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 NGRNQ9NPE2 291 aaKnown RBP26.64■■□□□ 1.86
CPSF1-202ENST00000527827 DISC1Q9NRI5 854 aa26.64■■□□□ 1.86
CPSF1-202ENST00000527827 SRGAP2BP0DMP2 458 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 PPM1AP35813 382 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 GPC3P51654 580 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 PRKCEQ02156 737 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 SIGLEC14Q08ET2 396 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 CLLU1OSQ5K130 101 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 LLGL2Q6P1M3 1020 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 JAKMIP1Q96N16 626 aaKnown RBP26.63■■□□□ 1.85
CPSF1-202ENST00000527827 PHOX2BQ99453 314 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 APOL5Q9BWW9 433 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 NRBP2Q9NSY0 501 aa26.63■■□□□ 1.85
CPSF1-202ENST00000527827 DARSP14868 501 aaKnown RBP26.62■■□□□ 1.85
CPSF1-202ENST00000527827 ZNF598Q86UK7 904 aaKnown RBP26.62■■□□□ 1.85
CPSF1-202ENST00000527827 SUGP1Q8IWZ8 645 aaKnown RBP26.62■■□□□ 1.85
CPSF1-202ENST00000527827 ABI1Q8IZP0 508 aa26.62■■□□□ 1.85
CPSF1-202ENST00000527827 FBXL6Q8N531 539 aa26.62■■□□□ 1.85
CPSF1-202ENST00000527827 BICD2Q8TD16 824 aa26.62■■□□□ 1.85
CPSF1-202ENST00000527827 ASIC4Q96FT7 647 aa26.62■■□□□ 1.85
CPSF1-202ENST00000527827 SPG21Q9NZD8 308 aa26.62■■□□□ 1.85
CPSF1-202ENST00000527827 FGFR4P22455 802 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 KRT17Q04695 432 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 TMC7Q7Z402 723 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 FBXL16Q8N461 479 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 RNF169Q8NCN4 708 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 SLC5A5Q92911 643 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 CCDC136Q96JN2 1154 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 RIT2Q99578 217 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 SNX14Q9Y5W7 946 aa26.61■■□□□ 1.85
CPSF1-202ENST00000527827 A0A0U1RQF3 1178 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 TARBP2Q15633 366 aaKnown RBP26.6■■□□□ 1.85
CPSF1-202ENST00000527827 PTPN21Q16825 1174 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 BLOC1S2Q6QNY1 142 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 SLC39A11Q8N1S5 342 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 CCDC148Q8NFR7 591 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 RNF26Q9BY78 433 aaPredicted RBP26.6■■□□□ 1.85
CPSF1-202ENST00000527827 AGXT2Q9BYV1 514 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 UNC45AQ9H3U1 944 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 VPS54Q9P1Q0 977 aa26.6■■□□□ 1.85
CPSF1-202ENST00000527827 CHMP2AO43633 222 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 GAS7O60861 476 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 EOMESO95936 686 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 HOXB8P17481 243 aaPredicted RBP26.59■■□□□ 1.85
CPSF1-202ENST00000527827 USP11P51784 963 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 PTPN5P54829 565 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 AKAP17AQ02040 695 aaKnown RBP26.59■■□□□ 1.85
CPSF1-202ENST00000527827 TCF15Q12870 199 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 DRP2Q13474 957 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 CENPQQ7L2Z9 268 aaPredicted RBP26.59■■□□□ 1.85
CPSF1-202ENST00000527827 HELQQ8TDG4 1101 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 GJA10Q969M2 543 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 SLC26A6Q9BXS9 759 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 CDH22Q9UJ99 828 aa26.59■■□□□ 1.85
CPSF1-202ENST00000527827 C2orf71A6NGG8 1288 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 CSDE1O75534 798 aaKnown RBP26.58■■□□□ 1.85
CPSF1-202ENST00000527827 IFNAR1P17181 557 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 SFNP31947 248 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 HSPA4P34932 840 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 JAK3P52333 1124 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 TBC1D8BQ0IIM8 1120 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 LRCH2Q5VUJ6 765 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 MRPL43Q8N983 215 aaKnown RBP26.58■■□□□ 1.85
CPSF1-202ENST00000527827 NLRP7Q8WX94 980 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 SCLT1Q96NL6 688 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 PRRX2Q99811 253 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 TEKT3Q9BXF9 490 aa26.58■■□□□ 1.85
CPSF1-202ENST00000527827 MYO10Q9HD67 2058 aa26.58■■□□□ 1.84
CPSF1-202ENST00000527827 RPS6KB1P23443 525 aa26.57■■□□□ 1.84
CPSF1-202ENST00000527827 SP100P23497 879 aaPredicted RBP26.57■■□□□ 1.84
CPSF1-202ENST00000527827 VCPP55072 806 aaKnown RBP26.57■■□□□ 1.84
CPSF1-202ENST00000527827 SMC1AQ14683 1233 aaKnown RBP26.57■■□□□ 1.84
CPSF1-202ENST00000527827 CASP10Q92851 521 aa26.57■■□□□ 1.84
CPSF1-202ENST00000527827 CEP89Q96ST8 783 aa26.57■■□□□ 1.84
CPSF1-202ENST00000527827 HCFC2Q9Y5Z7 792 aa26.57■■□□□ 1.84
CPSF1-202ENST00000527827 PSMD10O75832 226 aa26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms