RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C5orf67F2Z3F1 127 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 H3BNC9 293 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 ZSCAN20P17040 1043 aaPredicted RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 TXKP42681 527 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 POLGP54098 1239 aaPredicted RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 DSC3Q14574 896 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 PLA2G4FQ68DD2 849 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 TMX3Q96JJ7 454 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 EIF2AK1Q9BQI3 630 aaKnown RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 C11orf84Q9BUA3 381 aaPredicted RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 DHX33Q9H6R0 707 aaKnown RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 RGL1Q9NZL6 768 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 SUCLA2Q9P2R7 463 aaPredicted RBP23.06■■□□□ 1.28
VPS28-206ENST00000526734 PCDHB7Q9Y5E2 793 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 RBAK-RBAKDNI3L0D1 243 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 MGEA5O60502 916 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 U2AF2P26368 475 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS28-206ENST00000526734 MCM7P33993 719 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 CTNNB1P35222 781 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 TCP11Q8WWU5 503 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 HSD17B14Q9BPX1 270 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 PLVAPQ9BX97 442 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 TMEM161AQ9NX61 479 aa23.05■■□□□ 1.28
VPS28-206ENST00000526734 WRAP73Q9P2S5 460 aaPredicted RBP23.05■■□□□ 1.28
VPS28-206ENST00000526734 WNT7AO00755 349 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 HOXA2O43364 376 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 SLITRK3O94933 977 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 OR52Z1P0C646 297 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 ATP2B1P20020 1258 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 SFPQP23246 707 aaKnown RBP eCLIP23.04■■□□□ 1.28
VPS28-206ENST00000526734 BMPR1AP36894 532 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 NPEPPSP55786 919 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 FAM189BP81408 668 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 CYP4A11Q02928 519 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 GPM6BQ13491 265 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 AAK1Q2M2I8 961 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 NAALADL2Q58DX5 795 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 TTC38Q5R3I4 469 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 TPH2Q8IWU9 490 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 PSPC1Q8WXF1 523 aaKnown RBP23.04■■□□□ 1.28
VPS28-206ENST00000526734 SYMPKQ92797 1274 aaKnown RBP23.04■■□□□ 1.28
VPS28-206ENST00000526734 MRPL38Q96DV4 380 aaKnown RBP23.04■■□□□ 1.28
VPS28-206ENST00000526734 LMAN2LQ9H0V9 348 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 ANKEF1Q9NU02 776 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 COG5Q9UP83 839 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 RALGAPA2Q2PPJ7 1873 aa23.04■■□□□ 1.28
VPS28-206ENST00000526734 DRP2Q13474 957 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 CTTNQ14247 550 aaKnown RBP23.03■■□□□ 1.28
VPS28-206ENST00000526734 SKIV2LQ15477 1246 aaKnown RBP23.03■■□□□ 1.28
VPS28-206ENST00000526734 TIGD5Q53EQ6 642 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 XKR9Q5GH70 373 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 TJAP1Q5JTD0 557 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 SH2D3AQ9BRG2 576 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 TMEM60Q9H2L4 133 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 ATP6V0A4Q9HBG4 840 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 CHST12Q9NRB3 414 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 DACT1Q9NYF0 836 aa23.03■■□□□ 1.28
VPS28-206ENST00000526734 LOXHD1Q8IVV2 1947 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 ASAP2O43150 1006 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 LINC00271P0C7V0 271 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 XRCC6P12956 609 aaKnown RBP eCLIP23.02■■□□□ 1.287e-6■□□□□ 8.8
VPS28-206ENST00000526734 MRPS5P82675 430 aaKnown RBP23.02■■□□□ 1.28
VPS28-206ENST00000526734 RHPN2Q8IUC4 686 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 ERMNQ8TAM6 284 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 RSPH1Q8WYR4 309 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 P2RX5Q93086 422 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 CCDC43Q96MW1 224 aaKnown RBP23.02■■□□□ 1.28
VPS28-206ENST00000526734 TUFT1Q9NNX1 390 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.02■■□□□ 1.28
VPS28-206ENST00000526734 COL4A3BPQ9Y5P4 624 aa23.02■■□□□ 1.28
VPS28-206ENST00000526734 TRANK1O15050 2925 aa23.02■■□□□ 1.27
VPS28-206ENST00000526734 A0A087WZ62 844 aa23.01■■□□□ 1.27
VPS28-206ENST00000526734 DLL1O00548 723 aa23.01■■□□□ 1.27
VPS28-206ENST00000526734 EMC2Q15006 297 aa23.01■■□□□ 1.27
VPS28-206ENST00000526734 MTRQ99707 1265 aa23.01■■□□□ 1.27
VPS28-206ENST00000526734 FDXACB1Q9BRP7 624 aaPredicted RBP23.01■■□□□ 1.27
VPS28-206ENST00000526734 STK24Q9Y6E0 443 aa23.01■■□□□ 1.27
VPS28-206ENST00000526734 PRRC2BQ5JSZ5 2229 aaKnown RBP23.01■■□□□ 1.27
VPS28-206ENST00000526734 DGAT1O75907 488 aa23■■□□□ 1.27
VPS28-206ENST00000526734 MUTP22033 750 aa23■■□□□ 1.27
VPS28-206ENST00000526734 ZNF174Q15697 407 aa23■■□□□ 1.27
VPS28-206ENST00000526734 SRGAP1Q7Z6B7 1085 aa23■■□□□ 1.27
VPS28-206ENST00000526734 ZNF668Q96K58 619 aaPredicted RBP23■■□□□ 1.27
VPS28-206ENST00000526734 NLRP4Q96MN2 994 aa23■■□□□ 1.27
VPS28-206ENST00000526734 POLR3CQ9BUI4 534 aaPredicted RBP23■■□□□ 1.27
VPS28-206ENST00000526734 TRAIPQ9BWF2 469 aa23■■□□□ 1.27
VPS28-206ENST00000526734 PRDM6Q9NQX0 595 aa23■■□□□ 1.27
VPS28-206ENST00000526734 AAASQ9NRG9 546 aa23■■□□□ 1.27
VPS28-206ENST00000526734 MRPL42Q9Y6G3 142 aaKnown RBP23■■□□□ 1.27
VPS28-206ENST00000526734 POTEMA6NI47 508 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 LAD1O00515 517 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 SKIP12755 728 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 MXD4Q14582 209 aaPredicted RBP22.99■■□□□ 1.27
VPS28-206ENST00000526734 PCBP1Q15365 356 aaKnown RBP eCLIP22.99■■□□□ 1.27
VPS28-206ENST00000526734 CSPP1Q1MSJ5 1256 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 HAUS3Q68CZ6 603 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 ZNF579Q8NAF0 562 aaKnown RBP22.99■■□□□ 1.27
VPS28-206ENST00000526734 ASB2Q96Q27 587 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 RAB34Q9BZG1 259 aa22.99■■□□□ 1.27
VPS28-206ENST00000526734 TMEM117Q9H0C3 514 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms