RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SNX31Q8N9S9 440 aa9.52□□□□□ -0.88
VCAN-208ENST00000512590 NELFBQ8WX92 580 aa9.52□□□□□ -0.88
VCAN-208ENST00000512590 REXO5Q96IC2 774 aaKnown RBP9.52□□□□□ -0.88
VCAN-208ENST00000512590 RPAP3Q9H6T3 665 aaPredicted RBP9.52□□□□□ -0.88
VCAN-208ENST00000512590 TRIM17Q9Y577 477 aa9.52□□□□□ -0.88
VCAN-208ENST00000512590 FGD5Q6ZNL6 1462 aa9.52□□□□□ -0.88
VCAN-208ENST00000512590 KLRF2D3W0D1 207 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 ADORA2BP29275 332 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 COPB1P53618 953 aaKnown RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 PTPROQ16827 1216 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 USP39Q53GS9 565 aaKnown RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 IL31Q6EBC2 164 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 ERICH1Q86X53 443 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 IGSF22Q8N9C0 903 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 COLEC11Q9BWP8 271 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 VPS54Q9P1Q0 977 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 PI4KBQ9UBF8 816 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 STAP1Q9ULZ2 295 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 POLR1DQ9Y2S0 133 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 SNAPC4Q5SXM2 1469 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 A0A087X0T9 212 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 USP17L12C9JPN9 530 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 USP17L21D6R901 530 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 STXBP3O00186 592 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 RPS6KA5O75582 802 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 KCNA2P16389 499 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 EEF1DP29692 281 aaKnown RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 TIMM10P62072 90 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 PPARDQ03181 441 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 SF3A3Q12874 501 aaKnown RBP eCLIP9.52□□□□□ -0.89
VCAN-208ENST00000512590 HIST2H2ACQ16777 129 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 HIST2H2AA3Q6FI13 130 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 TRIML2Q8N7C3 387 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 IP6K1Q92551 441 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 PCIF1Q9H4Z3 704 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 RUBCNLQ9H714 662 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 hCG_1642624A0A1W2PR95 340 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 RGS16O15492 202 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 WBP4O75554 376 aaKnown RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 SKILP12757 684 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 ALOX15P16050 662 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 MAPK4P31152 587 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 ARID5BQ14865 1188 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 MAPK6Q16659 721 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 RASEFQ8IZ41 740 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 TTC13Q8NBP0 860 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 EMILIN2Q9BXX0 1053 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 TMEM206Q9H813 350 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 MLNP12872 115 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 HSD3B2P26439 372 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 AP3B2Q13367 1082 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 ZNF790Q6PG37 636 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 TMC7Q7Z402 723 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 DEFB128Q7Z7B8 93 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 DCP1BQ8IZD4 617 aaKnown RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 ZNF560Q96MR9 790 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 METTL22Q9BUU2 404 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 ACTR5Q9H9F9 607 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 FGFR1OP2Q9NVK5 253 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 FAF1Q9UNN5 650 aaPredicted RBP9.52□□□□□ -0.89
VCAN-208ENST00000512590 PCDHGB3Q9Y5G1 929 aa9.52□□□□□ -0.89
VCAN-208ENST00000512590 PRR23D1E9PI22 279 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 POC1B-GALNT4F8VUJ3 575 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 SASH1O94885 1247 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 LMNAP02545 664 aaKnown RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 PRR23D2P0DMB1 279 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 SOAT1P35610 550 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GPC3P51654 580 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 SHROOM1Q2M3G4 852 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 LAYNQ6UX15 382 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 SCAIQ8N9R8 606 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GJA10Q969M2 543 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 RIMS2Q9UQ26 1411 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 KIF21BO75037 1637 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GOLGA8MH3BSY2 632 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 H7C4K7 107 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 CLUP10909 449 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 PDX1P52945 283 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 RCN2Q14257 317 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 NEK8Q86SG6 692 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 NOSTRINQ8IVI9 506 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GTF3C2Q8WUA4 911 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 MRPS31Q92665 395 aaKnown RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 NRBF2Q96F24 287 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 STK17AQ9UEE5 414 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 ITIH6Q6UXX5 1313 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 LOC102724428A0A0B4J2F2 783 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 HOXA2O43364 376 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 LDHAP00338 332 aaKnown RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 AMHP03971 560 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GAP43P17677 238 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 PTPN9P43378 593 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 SIK1P57059 783 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 GIMAP6Q6P9H5 292 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 TRIM69Q86WT6 500 aa9.51□□□□□ -0.89
VCAN-208ENST00000512590 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.51□□□□□ -0.89
VCAN-208ENST00000512590 NGRNQ9NPE2 291 aaKnown RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 PACSIN2Q9UNF0 486 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 BLMP54132 1417 aaPredicted RBP9.51□□□□□ -0.89
VCAN-208ENST00000512590 DIAPH2O60879 1101 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms