RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 RDM1Q8NG50 284 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 TMEM40Q8WWA1 233 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 BRF1Q92994 677 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 JPH2Q9BR39 696 aaPredicted RBP23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 DISC1Q9NRI5 854 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 GPR32O75388 356 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 FGFR1P11362 822 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 ALDH7A1P49419 539 aaKnown RBP23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 ZXDAP98168 799 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 SMC1AQ14683 1233 aaKnown RBP23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 PLPP4Q5VZY2 271 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 CPLX2Q6PUV4 134 aaKnown RBP23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 KCNT2Q6UVM3 1135 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 TMEM184AQ6ZMB5 413 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 Q6ZUG5 572 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 RNF169Q8NCN4 708 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 NLRP7Q8WX94 980 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 CRYGNQ8WXF5 182 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 JAKMIP1Q96N16 626 aaKnown RBP23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 NECTIN4Q96NY8 510 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 CDHR5Q9HBB8 845 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 SH3GLB2Q9NR46 395 aa23.73■■□□□ 1.39
SQSTM1-210ENST00000506042 ZBTB42B2RXF5 422 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 PER2O15055 1255 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 REC8O95072 547 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 GLP2RO95838 553 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 CA8P35219 290 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 TECP42680 631 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 CLCN3P51790 818 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 SIGLEC14Q08ET2 396 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 APOBRQ0VD83 1088 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 GIT2Q14161 759 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 ADCK5Q3MIX3 580 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 LRCH2Q5VUJ6 765 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 GCOM2Q9BZD3 368 aaPredicted RBP23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 STK39Q9UEW8 545 aa23.72■■□□□ 1.39
SQSTM1-210ENST00000506042 NID2Q14112 1375 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 RBAK-RBAKDNI3L0D1 243 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 SFPQP23246 707 aaKnown RBP eCLIP23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 NLRP5P59047 1200 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 PRKCEQ02156 737 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 DSC3Q14574 896 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 EXOC8Q8IYI6 725 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 FAM177A1Q8N128 213 aaPredicted RBP23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 FBXL6Q8N531 539 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 TMEM169Q96HH4 297 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 CCDC136Q96JN2 1154 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 CHST12Q9NRB3 414 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 FAM217BQ9NTX9 383 aaPredicted RBP23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 MUC6Q6W4X9 2439 aa23.71■■□□□ 1.39
SQSTM1-210ENST00000506042 FSCN2O14926 492 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 DKC1O60832 514 aaKnown RBP eCLIP23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 ATP4AP20648 1035 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 ERVFC1P60507 584 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 ITIH3Q06033 890 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 COL9A3Q14050 684 aaPredicted RBP23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 ANKRD54Q6NXT1 300 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 ECHDC2Q86YB7 292 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 RASEFQ8IZ41 740 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 FBXL16Q8N461 479 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 SLC26A6Q9BXS9 759 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 CWH43Q9H720 699 aa23.7■■□□□ 1.38
SQSTM1-210ENST00000506042 CPLX1O14810 134 aa23.69■■□□□ 1.38
SQSTM1-210ENST00000506042 DARSP14868 501 aaKnown RBP23.69■■□□□ 1.38
SQSTM1-210ENST00000506042 SUSD6Q92537 303 aa23.69■■□□□ 1.38
SQSTM1-210ENST00000506042 RIPOR3Q96MK2 946 aa23.69■■□□□ 1.38
SQSTM1-210ENST00000506042 A0A0U1RQF3 1178 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 CHMP2AO43633 222 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 IFNAR1P17181 557 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 RAB27AP51159 221 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 GPC3P51654 580 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 NUBP1P53384 320 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 XKR3Q5GH77 459 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 MIER3Q7Z3K6 550 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 LRRC71Q8N4P6 559 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 CASD1Q96PB1 797 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 DZANK1Q9NVP4 752 aa23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 SEPT9Q9UHD8 586 aaPredicted RBP23.68■■□□□ 1.38
SQSTM1-210ENST00000506042 MTHFRP42898 656 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 PTPN21Q16825 1174 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 GALNT17Q6IS24 598 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 LLGL2Q6P1M3 1020 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 PHKBQ93100 1093 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 ADAMTS10Q9H324 1103 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 PCDHGC5Q9Y5F6 944 aa23.67■■□□□ 1.38
SQSTM1-210ENST00000506042 SPDYE4A6NLX3 237 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 RPS6KB1P23443 525 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 SSRP1Q08945 709 aaKnown RBP23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 TWF2Q6IBS0 349 aaKnown RBP23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 ELMSAN1Q6PJG2 1045 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 GLB1LQ6UWU2 654 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 ZNF410Q86VK4 478 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 UBALD2Q8IYN6 164 aa23.66■■□□□ 1.38
SQSTM1-210ENST00000506042 MSH4O15457 936 aa23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 HSPA4P34932 840 aa23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 RNASELQ05823 741 aaKnown RBP23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 SLC5A5Q92911 643 aa23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 PGBD4Q96DM1 585 aa23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 TSHZ2Q9NRE2 1034 aa23.65■■□□□ 1.38
SQSTM1-210ENST00000506042 XBP1P17861 261 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms