RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 NPY5RQ15761 445 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 MCTP2Q6DN12 878 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 USP17L6PQ6QN14 398 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 NOSTRINQ8IVI9 506 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 DHX37Q8IY37 1157 aaKnown RBP13.73□□□□□ -0.21
UPF3A-210ENST00000493727 ARNTL2Q8WYA1 636 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 PDCD2LQ9BRP1 358 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 EHMT1Q9H9B1 1298 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 TMPRSS4Q9NRS4 437 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 NOL7Q9UMY1 257 aaKnown RBP13.73□□□□□ -0.21
UPF3A-210ENST00000493727 WDFY4Q6ZS81 3184 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 OPLAHO14841 1288 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PPFIA4O75335 1185 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 SELPP16109 830 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 U2AF2P26368 475 aaKnown RBP eCLIP13.72□□□□□ -0.214e-7■■■■■ 39.1
UPF3A-210ENST00000493727 KCNJ6P48051 423 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 RBL2Q08999 1139 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 AP3B2Q13367 1082 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PIK3AP1Q6ZUJ8 805 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 FCHSD1Q86WN1 690 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 C7orf31Q8N865 590 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PPP1R13LQ8WUF5 828 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 CTAGE1Q96RT6 745 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 TMEM260Q9NX78 707 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 GTF2IRD1Q9UHL9 959 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PCDHA6Q9UN73 950 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 ZDHHC9Q9Y397 364 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PCDHA8Q9Y5H6 950 aa13.72□□□□□ -0.21
UPF3A-210ENST00000493727 PIK3CDO00329 1044 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 TRAK2O60296 914 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 STAM2O75886 525 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 F2P00734 622 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 FOSP01100 380 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 MYCLP12524 364 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 HOXD8P13378 290 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 CCND2P30279 289 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 GPNMBQ14956 572 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 PGM5Q15124 567 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 NONOQ15233 471 aaKnown RBP eCLIP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 GNPTABQ3T906 1256 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 GDF6Q6KF10 455 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 LRRC8DQ7L1W4 858 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 VSIG10LQ86VR7 867 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 KAT2BQ92831 832 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 PGBD1Q96JS3 809 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 ZNF396Q96N95 335 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-210ENST00000493727 ANO3Q9BYT9 981 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 PGPEP1Q9NXJ5 209 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 HCN4Q9Y3Q4 1203 aa13.71□□□□□ -0.21
UPF3A-210ENST00000493727 MICAL3Q7RTP6 2002 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 LCHNA4D1U4 455 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 HAS3O00219 553 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 MEIS2O14770 477 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 ADAMTS3O15072 1205 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 EFCAB14O75071 495 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 NCLP19338 710 aaKnown RBP13.7□□□□□ -0.22
UPF3A-210ENST00000493727 ATP2B1P20020 1258 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 PTK7Q13308 1070 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 KIAA0753Q2KHM9 967 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 TMEM31Q5JXX7 168 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 CELF3Q5SZQ8 465 aaKnown RBP13.7□□□□□ -0.22
UPF3A-210ENST00000493727 TNPO1Q92973 898 aaKnown RBP13.7□□□□□ -0.22
UPF3A-210ENST00000493727 SPATA33Q96N06 139 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 HDAC6Q9UBN7 1215 aa13.7□□□□□ -0.22
UPF3A-210ENST00000493727 M0R2N6 131 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 GGPS1O95749 300 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 WDR5P61964 334 aaKnown RBP13.69□□□□□ -0.22
UPF3A-210ENST00000493727 INF2Q27J81 1249 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 RILPL1Q5EBL4 403 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 FAM173BQ6P4H8 233 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 CNKSR3Q6P9H4 555 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 TBCKQ8TEA7 893 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 TNFRSF25Q93038 417 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 CD320Q9NPF0 282 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 LMCD1Q9NZU5 365 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 MYO7AQ13402 2215 aa13.69□□□□□ -0.22
UPF3A-210ENST00000493727 C5orf42Q9H799 3197 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 DOCK5Q9H7D0 1870 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 ZNF318Q5VUA4 2279 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 LILRA1O75019 489 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 CXCL10P02778 98 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 ZNF286BP0CG31 522 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 CKBP12277 381 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 TRAPPC10P48553 1259 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 KRT85P78386 507 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 LETM2Q2VYF4 491 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 EARS2Q5JPH6 523 aaKnown RBP13.68□□□□□ -0.22
UPF3A-210ENST00000493727 NEK8Q86SG6 692 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 GDPD5Q8WTR4 605 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 DHX38Q92620 1227 aaKnown RBP13.68□□□□□ -0.22
UPF3A-210ENST00000493727 GBP4Q96PP9 640 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 MLXIPQ9HAP2 919 aa13.68□□□□□ -0.22
UPF3A-210ENST00000493727 TRIOO75962 3097 aa13.67□□□□□ -0.22
UPF3A-210ENST00000493727 FRMPD4Q14CM0 1322 aa13.67□□□□□ -0.22
UPF3A-210ENST00000493727 EMSYQ7Z589 1322 aa13.67□□□□□ -0.22
UPF3A-210ENST00000493727 ABHD14A-ACY1A0A1B0GW23 586 aa13.67□□□□□ -0.22
UPF3A-210ENST00000493727 NOP56O00567 594 aaKnown RBP13.67□□□□□ -0.22
UPF3A-210ENST00000493727 UBA1P22314 1058 aaKnown RBP13.67□□□□□ -0.22
UPF3A-210ENST00000493727 ICAM3P32942 547 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms