RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CATSPER3Q86XQ3 398 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 MICALL1Q8N3F8 863 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 IL27Q8NEV9 243 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 ZNF689Q96CS4 500 aaPredicted RBP15.55■□□□□ 0.08
SYNE1-226ENST00000488376 SCLT1Q96NL6 688 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 TGS1Q96RS0 853 aaKnown RBP15.55■□□□□ 0.08
SYNE1-226ENST00000488376 FDXACB1Q9BRP7 624 aaPredicted RBP15.55■□□□□ 0.08
SYNE1-226ENST00000488376 FTHL17Q9BXU8 183 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 XPNPEP1Q9NQW7 623 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 FOXD4L1Q9NU39 408 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 NOL7Q9UMY1 257 aaKnown RBP15.55■□□□□ 0.08
SYNE1-226ENST00000488376 LOXHD1Q8IVV2 1947 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 GPR182O15218 404 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 DGKIO75912 1065 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 LYPLA2O95372 231 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 POLGP54098 1239 aaPredicted RBP15.54■□□□□ 0.08
SYNE1-226ENST00000488376 PTGDRQ13258 359 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 ECM1Q16610 540 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 POTEGQ6S5H5 508 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 PRPF31Q8WWY3 499 aaKnown RBP15.54■□□□□ 0.08
SYNE1-226ENST00000488376 NLRP4Q96MN2 994 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 RGS18Q9NS28 235 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 HCSTQ9UBK5 93 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 KIF3AQ9Y496 699 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 MTCH2Q9Y6C9 303 aa15.54■□□□□ 0.08
SYNE1-226ENST00000488376 PRUNE2Q8WUY3 3088 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 ADGRA3Q8IWK6 1321 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 DENND3A2RUS2 1198 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 PP2D1A8MPX8 630 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 C9IYK1 514 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 H3BQV1 296 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 DKC1O60832 514 aaKnown RBP eCLIP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 SARSP49591 514 aaKnown RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 ORC2Q13416 577 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 PAN2Q504Q3 1202 aaKnown RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 LARP1BQ659C4 914 aaKnown RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 NPAS4Q8IUM7 802 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 SLC17A8Q8NDX2 589 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 NEK9Q8TD19 979 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 SLC7A3Q8WY07 619 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 MINDY3Q9H8M7 445 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 IFT122Q9HBG6 1241 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-226ENST00000488376 REV3LO60673 3130 aa15.53■□□□□ 0.08
SYNE1-226ENST00000488376 SRGAP2CP0DJJ0 459 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 FGFR1P11362 822 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 CDC25AP30304 524 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 RFC5P40937 340 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 RARRES1P49788 294 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 DNM2P50570 870 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 FXR2P51116 673 aaKnown RBP eCLIP15.52■□□□□ 0.08
SYNE1-226ENST00000488376 LAMTOR4Q0VGL1 99 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 EPC2Q52LR7 807 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 FAM102BQ5T8I3 360 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 OTUD6AQ7L8S5 288 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 FERMT3Q86UX7 667 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 FBXO22Q8NEZ5 403 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 ASAP3Q8TDY4 903 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 RNF19AQ9NV58 838 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 COL4A3BPQ9Y5P4 624 aa15.52■□□□□ 0.08
SYNE1-226ENST00000488376 MRPL42Q9Y6G3 142 aaKnown RBP15.52■□□□□ 0.08
SYNE1-226ENST00000488376 TRANK1O15050 2925 aa15.52■□□□□ 0.07
SYNE1-226ENST00000488376 ARID2Q68CP9 1835 aa15.52■□□□□ 0.07
SYNE1-226ENST00000488376 USO1O60763 962 aaKnown RBP15.51■□□□□ 0.07
SYNE1-226ENST00000488376 FAM189BP81408 668 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 BTG3Q14201 252 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-226ENST00000488376 SLC24A5Q71RS6 500 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 TMEM192Q8IY95 271 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 FIBCD1Q8N539 461 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 POLR3CQ9BUI4 534 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-226ENST00000488376 GCOM2Q9BZD3 368 aaPredicted RBP15.51■□□□□ 0.07
SYNE1-226ENST00000488376 TUFT1Q9NNX1 390 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 GPRC5CQ9NQ84 441 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 ANKEF1Q9NU02 776 aa15.51■□□□□ 0.07
SYNE1-226ENST00000488376 TTC3P53804 2025 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 VPS37CA5D8V6 355 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 ATF7P17544 494 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 POU3F3P20264 500 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 RPA1P27694 616 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 MAEAQ7L5Y9 396 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 ZNF410Q86VK4 478 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 IGSF22Q8N9C0 903 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 PSPC1Q8WXF1 523 aaKnown RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 MTRQ99707 1265 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 JPH2Q9BR39 696 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 MMTAG2Q9BU76 263 aaKnown RBP15.5■□□□□ 0.07
SYNE1-226ENST00000488376 POLD4Q9HCU8 107 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 C1orf112Q9NSG2 853 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 LRWD1Q9UFC0 647 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 LRFN2Q9ULH4 789 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 PPME1Q9Y570 386 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 PCDHB7Q9Y5E2 793 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 UNC80Q8N2C7 3258 aa15.5■□□□□ 0.07
SYNE1-226ENST00000488376 K7ELQ4 463 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-226ENST00000488376 STAG3L1P0CL83 205 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 CTNNB1P35222 781 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 CCT6AP40227 531 aaKnown RBP15.49■□□□□ 0.07
SYNE1-226ENST00000488376 ATP2C1P98194 919 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms