RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 DARSP14868 501 aaKnown RBP25.4■■□□□ 1.66
PTPN4-211ENST00000488279 GCFC2P16383 781 aaKnown RBP25.4■■□□□ 1.66
PTPN4-211ENST00000488279 COL9A1P20849 921 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 LTBRP36941 435 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 DNM2P50570 870 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 PSMC5P62195 406 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 GJD3Q8N144 294 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 EPHX3Q9H6B9 360 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 CD320Q9NPF0 282 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 GJB4Q9NTQ9 266 aa25.4■■□□□ 1.66
PTPN4-211ENST00000488279 TYW1Q9NV66 732 aaKnown RBP25.4■■□□□ 1.66
PTPN4-211ENST00000488279 MYO7AQ13402 2215 aa25.39■■□□□ 1.66
PTPN4-211ENST00000488279 HOXA2O43364 376 aa25.39■■□□□ 1.66
PTPN4-211ENST00000488279 CCNT1O60563 726 aaKnown RBP25.39■■□□□ 1.66
PTPN4-211ENST00000488279 CTDNEP1O95476 244 aa25.39■■□□□ 1.66
PTPN4-211ENST00000488279 FGFR1P11362 822 aa25.39■■□□□ 1.66
PTPN4-211ENST00000488279 PIK3AP1Q6ZUJ8 805 aa25.39■■□□□ 1.66
PTPN4-211ENST00000488279 NAP1L4Q99733 375 aaKnown RBP25.39■■□□□ 1.66
PTPN4-211ENST00000488279 TMEM150BA6NC51 233 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 MARCH6O60337 910 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 DTNBO60941 627 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 SSTR3P32745 418 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-211ENST00000488279 PPP2R5CQ13362 524 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 CSPP1Q1MSJ5 1256 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 OXER1Q8TDS5 423 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 CEP89Q96ST8 783 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 SH2D3AQ9BRG2 576 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 GCOM2Q9BZD3 368 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-211ENST00000488279 TMEM117Q9H0C3 514 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 KCNMB3Q9NPA1 279 aa25.38■■□□□ 1.65
PTPN4-211ENST00000488279 IGKV6-21A0A0C4DH24 114 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 EML1O00423 815 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 DKC1O60832 514 aaKnown RBP eCLIP25.37■■□□□ 1.654e-7■■■■■ 56.9
PTPN4-211ENST00000488279 GTF2F1P35269 517 aaKnown RBP eCLIP25.37■■□□□ 1.65
PTPN4-211ENST00000488279 QARSP47897 775 aaKnown RBP25.37■■□□□ 1.65
PTPN4-211ENST00000488279 UBE3AQ05086 875 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 DRP2Q13474 957 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 NECAB1Q8N987 351 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 MICAL1Q8TDZ2 1067 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 VAV3Q9UKW4 847 aa25.37■■□□□ 1.65
PTPN4-211ENST00000488279 TBX3O15119 743 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 MAFO75444 373 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-211ENST00000488279 IRS1P35568 1242 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 DLX2Q07687 328 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-211ENST00000488279 ADAM15Q13444 863 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 ANO5Q75V66 913 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 ECHDC2Q86YB7 292 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 ABI1Q8IZP0 508 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 JPH2Q9BR39 696 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-211ENST00000488279 BRMS1Q9HCU9 246 aa25.36■■□□□ 1.65
PTPN4-211ENST00000488279 SUCLA2Q9P2R7 463 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-211ENST00000488279 CSDE1O75534 798 aaKnown RBP25.35■■□□□ 1.65
PTPN4-211ENST00000488279 FGF18O76093 207 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 LAG3P18627 525 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 FGFR4P22455 802 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 ME3Q16798 604 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 THNSL1Q8IYQ7 743 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 COLGALT1Q8NBJ5 622 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 KHSRPQ92945 711 aaKnown RBP eCLIP25.35■■□□□ 1.653e-6■■■■□ 21.2
PTPN4-211ENST00000488279 CASD1Q96PB1 797 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 CWH43Q9H720 699 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 DACT1Q9NYF0 836 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 PRKAG3Q9UGI9 489 aa25.35■■□□□ 1.65
PTPN4-211ENST00000488279 A0A0U1RQF3 1178 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 PI4K2BG5E9Z4 385 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 LINC01565O15544 149 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 EOMESO95936 686 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 P4HBP07237 508 aaKnown RBP25.34■■□□□ 1.65
PTPN4-211ENST00000488279 FDPSP14324 419 aaKnown RBP25.34■■□□□ 1.65
PTPN4-211ENST00000488279 KRT2P35908 639 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 NEK4P51957 841 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 CLUL1Q15846 466 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 ADGRD2Q7Z7M1 963 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 RHPN2Q8IUC4 686 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 RNF169Q8NCN4 708 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 HAS1Q92839 578 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 GTF3C6Q969F1 213 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 INO80BQ9C086 356 aaPredicted RBP25.34■■□□□ 1.65
PTPN4-211ENST00000488279 CYP26B1Q9NR63 512 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 TLR9Q9NR96 1032 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 CHST12Q9NRB3 414 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 HCSTQ9UBK5 93 aa25.34■■□□□ 1.65
PTPN4-211ENST00000488279 A0A087WZ62 844 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 BAG4O95429 457 aaKnown RBP25.33■■□□□ 1.65
PTPN4-211ENST00000488279 NRIP1P48552 1158 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 NDUFV1P49821 464 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 EARS2Q5JPH6 523 aaKnown RBP25.33■■□□□ 1.65
PTPN4-211ENST00000488279 PLA2G4FQ68DD2 849 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 RBM23Q86U06 439 aaKnown RBP25.33■■□□□ 1.65
PTPN4-211ENST00000488279 ZNF410Q86VK4 478 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 EXOC8Q8IYI6 725 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 EFHBQ8N7U6 833 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 FDXACB1Q9BRP7 624 aaPredicted RBP25.33■■□□□ 1.65
PTPN4-211ENST00000488279 TLE6Q9H808 572 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 RNF19AQ9NV58 838 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 CD207Q9UJ71 328 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 C5orf42Q9H799 3197 aa25.33■■□□□ 1.65
PTPN4-211ENST00000488279 TBX10O75333 385 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 SFPQP23246 707 aaKnown RBP eCLIP25.32■■□□□ 1.64
PTPN4-211ENST00000488279 NR5A1Q13285 461 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms