RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 VTI1AQ96AJ9 217 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 FAM20AQ96MK3 541 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 MTMR9Q96QG7 549 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 LBHD1Q9BQE6 289 aaPredicted RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 SH2D3AQ9BRG2 576 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 FTOQ9C0B1 505 aaKnown RBP eCLIP6.47□□□□□ -1.37
CUX1-208ENST00000485792 FOXP1Q9H334 677 aaPredicted RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 RC3H2Q9HBD1 1191 aaKnown RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 SETD4Q9NVD3 440 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 ZNF215Q9UL58 517 aaPredicted RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 PCDHA10Q9Y5I2 948 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 SQORQ9Y6N5 450 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 IGKV6-21A0A0C4DH24 114 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 RRN3P2A6NIE6 340 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 NOP56O00567 594 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 MGEA5O60502 916 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 C22orf31O95567 290 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 CHRNA1P02708 482 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 EDN1P05305 212 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 GNAT1P11488 350 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 INSRRP14616 1297 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 SELPP16109 830 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 XBP1P17861 261 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 SFNP31947 248 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 SLC19A1P41440 591 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 STAT5BP51692 787 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 GRIN1Q05586 938 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 ORC2Q13416 577 aaPredicted RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 BFSP2Q13515 415 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 PKP1Q13835 747 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 ECM1Q16610 540 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 PLEKHG4Q58EX7 1191 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 UTP14CQ5TAP6 766 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 PSRC1Q6PGN9 363 aaPredicted RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 PIK3AP1Q6ZUJ8 805 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 NEK8Q86SG6 692 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 DIS3L2Q8IYB7 885 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 RPUSD2Q8IZ73 545 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 ATP8B4Q8TF62 1192 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 SDF4Q9BRK5 362 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 ZNF577Q9BSK1 485 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 NIFKQ9BYG3 293 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 AGO3Q9H9G7 860 aaKnown RBP6.46□□□□□ -1.38
CUX1-208ENST00000485792 EVA1BQ9NVM1 165 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 MAP10Q9P2G4 905 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 PCDHA2Q9Y5H9 948 aa6.46□□□□□ -1.38
CUX1-208ENST00000485792 TRIOO75962 3097 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 TMEM265A0A087WTH1 108 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 A0A087WWV3 80 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.45□□□□□ -1.38
CUX1-208ENST00000485792 SMIM35A0A1B0GVV1 85 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.45□□□□□ -1.38
CUX1-208ENST00000485792 C17orf102A2RUQ5 167 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 HBP1O60381 514 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 BAIAP3O94812 1187 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 LYPLA2O95372 231 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 FGBP02675 491 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 RPLP2P05387 115 aaKnown RBP6.45□□□□□ -1.38
CUX1-208ENST00000485792 CTSHP09668 335 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 KRT2P35908 639 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 ZNF76P36508 570 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 RABGGTBP53611 331 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 KCNH2Q12809 1159 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 GRIK4Q16099 956 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 PLA2G4FQ68DD2 849 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 TAF2Q6P1X5 1199 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.45□□□□□ -1.38
CUX1-208ENST00000485792 LRRC8DQ7L1W4 858 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 KIAA0319LQ8IZA0 1049 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 CCDC155Q8N6L0 562 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 USP38Q8NB14 1042 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 PHOSPHO2Q8TCD6 241 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 EPS8L1Q8TE68 723 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 ATP6V0A1Q93050 837 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 NAP1L4Q99733 375 aaKnown RBP6.45□□□□□ -1.38
CUX1-208ENST00000485792 HSD17B14Q9BPX1 270 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 PBX4Q9BYU1 374 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 TMX1Q9H3N1 280 aa6.45□□□□□ -1.38
CUX1-208ENST00000485792 DDX25Q9UHL0 483 aaKnown RBP6.45□□□□□ -1.38
CUX1-208ENST00000485792 TSC2P49815 1807 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 CCDC194A0A1B0GVG4 234 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 PP2D1A8MPX8 630 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 WDR64B1ANS9 1081 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 SLITRK3O94933 977 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 PSAPP07602 524 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 SPATA31C1P0DKV0 1188 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 CTHP32929 405 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 TRAPPC10P48553 1259 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 JAK3P52333 1124 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 CHMP4BP1P59074 171 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 WDR5P61964 334 aaKnown RBP6.44□□□□□ -1.38
CUX1-208ENST00000485792 PRKCEQ02156 737 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 TMEM62Q0P6H9 643 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 ADGRE1Q14246 886 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 LPIN1Q14693 890 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 LAPTM4AQ15012 233 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 NR6A1Q15406 480 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 FAM47CQ5HY64 1035 aa6.44□□□□□ -1.38
CUX1-208ENST00000485792 ZNF484Q5JVG2 852 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms