RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TMEM184AQ6ZMB5 413 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 TEX2Q8IWB9 1127 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 REXO1Q8N1G1 1221 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 LINC01465Q8N7H1 131 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 MRPS27Q92552 414 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 JAKMIP1Q96N16 626 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 S1PR5Q9H228 398 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 TMEM161AQ9NX61 479 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 CDH22Q9UJ99 828 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 SNX14Q9Y5W7 946 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 HOXB8P17481 243 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 FGFR4P22455 802 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 RCAN1P53805 252 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 NLRP11P59045 1033 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 PLCB3Q01970 1234 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 KCNC3Q14003 757 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 NTRK3Q16288 839 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 ZNF746Q6NUN9 644 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 SYCE2Q6PIF2 218 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 KREMEN2Q8NCW0 462 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 BBXQ8WY36 941 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 KCNB2Q92953 911 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 ADAMTS10Q9H324 1103 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 NCOA5Q9HCD5 579 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 NGRNQ9NPE2 291 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 VPS54Q9P1Q0 977 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 CFAP54Q96N23 3096 aa15.67■□□□□ 0.1
SQSTM1-208ENST00000485412 MYO15AQ9UKN7 3530 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 TMEM150BA6NC51 233 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 HIDE1A8MVS5 230 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 HOXA2O43364 376 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 PRPF3O43395 683 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 GALR2O43603 387 aaPredicted RBP15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 CSDE1O75534 798 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 FAM189BP81408 668 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 KRT17Q04695 432 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 DRP2Q13474 957 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 MTMR3Q13615 1198 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 KRT32Q14532 448 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 TPRNQ4KMQ1 711 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 CES5AQ6NT32 575 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 TMC7Q7Z402 723 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 UBALD2Q8IYN6 164 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 ABI1Q8IZP0 508 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 CASP10Q92851 521 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 ZNF558Q96NG5 402 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 CASD1Q96PB1 797 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 TMEM117Q9H0C3 514 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 GLT8D2Q9H1C3 349 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 ELAC1Q9H777 363 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 C6orf50Q9HD87 102 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 SORCS3Q9UPU3 1222 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 AKT3Q9Y243 479 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 PCDHA10Q9Y5I2 948 aa15.66■□□□□ 0.1
SQSTM1-208ENST00000485412 MSH4O15457 936 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 CHMP2AO43633 222 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 PSAPP07602 524 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 CIITAP33076 1130 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 CA8P35219 290 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 PPM1AP35813 382 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 FGD1P98174 961 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 SETQ01105 290 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 PRKCEQ02156 737 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 CLLU1OSQ5K130 101 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 EFCAB12Q6NXP0 572 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 KCNT2Q6UVM3 1135 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 CENPQQ7L2Z9 268 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 SMAP1Q8IYB5 467 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 LRRC43Q8N309 656 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 NECTIN4Q96NY8 510 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 TBC1D22BQ9NU19 505 aa15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 PTPRZ1P23471 2315 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-208ENST00000485412 RPS6KB1P23443 525 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 HSPA4P34932 840 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 CCT2P78371 535 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 FOXK2Q01167 660 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 SMC1AQ14683 1233 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 SH2D3AQ9BRG2 576 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 SLC26A6Q9BXS9 759 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 AGXT2Q9BYV1 514 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 UNC45AQ9H3U1 944 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 SPG21Q9NZD8 308 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 SAMM50Q9Y512 469 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 DMDP11532 3685 aa15.64■□□□□ 0.09
SQSTM1-208ENST00000485412 C2CD4DB7Z1M9 353 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 PROB1E7EW31 1015 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 OATP04181 439 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 HMGB1P09429 215 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 ZSCAN20P17040 1043 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 GPC3P51654 580 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 ITIH3Q06033 890 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 BLOC1S2Q6QNY1 142 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 ECHDC2Q86YB7 292 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 RNF169Q8NCN4 708 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 FEZF2Q8TBJ5 459 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 CCDC136Q96JN2 1154 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 LARP6Q9BRS8 491 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 ADAM7Q9H2U9 754 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 POMKQ9H5K3 350 aa15.63■□□□□ 0.09
SQSTM1-208ENST00000485412 DISC1Q9NRI5 854 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms