RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 GLRA2P23416 452 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 CNGA1P29973 690 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 NMT1P30419 496 aaKnown RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 PPP1R2P41236 205 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 PSEN2P49810 448 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 POLGP54098 1239 aaPredicted RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 NCKAP1LP55160 1127 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ADAM17P78536 824 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 DRP2Q13474 957 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 HIC1Q14526 733 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 LRRC41Q15345 812 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 CENPPQ6IPU0 288 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 TTI2Q6NXR4 508 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MAEAQ7L5Y9 396 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ZNF720Q7Z2F6 126 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MYCT1Q8N699 235 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 AOPEPQ8N6M6 819 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ENOX1Q8TC92 643 aaKnown RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 ZNF507Q8TCN5 953 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ASAP3Q8TDY4 903 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 SH3TC2Q8TF17 1288 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 TRAPPC12Q8WVT3 735 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 KIFAP3Q92845 792 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ZBTB10Q96DT7 871 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 DRC1Q96MC2 740 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 CCDC43Q96MW1 224 aaKnown RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 NAT10Q9H0A0 1025 aaKnown RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 SEMA6BQ9H3T3 888 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ST6GALNAC4Q9H4F1 302 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 GRPEL1Q9HAV7 217 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 TBC1D7Q9P0N9 293 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 RWDD2AQ9UIY3 292 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ZNF215Q9UL58 517 aaPredicted RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 CTNND2Q9UQB3 1225 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MAPK8IP1Q9UQF2 711 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 TRPC6Q9Y210 931 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 FRMPD3Q5JV73 1810 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MBLAC1A4D2B0 266 aaPredicted RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 TRIM49BA6NDI0 452 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 EIF3DO15371 548 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP4-210ENST00000483212 AP5Z1O43299 807 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 GAS2O43903 313 aaKnown RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 KPNA6O60684 536 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 MYL3P08590 195 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 C6orf222P0C671 652 aaPredicted RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 SMIM10L2AP0DMW4 78 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 SMIM10L2BP0DMW5 78 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 ZNF18P17022 549 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 CCNE1P24864 410 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 PEX3P56589 373 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 MYL5Q02045 173 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 PAK1Q13153 545 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 MFSD10Q14728 455 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 KIAA0753Q2KHM9 967 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 UVSSAQ2YD98 709 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 ODR4Q5SWX8 454 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 FAM102BQ5T8I3 360 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 KLHL10Q6JEL2 608 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 FOXR2Q6PJQ5 311 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 MAMSTRQ6ZN01 415 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 ZC3H3Q8IXZ2 948 aaKnown RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 MYOCDQ8IZQ8 938 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 SPIRE2Q8WWL2 714 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 NELFBQ8WX92 580 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 SLC7A3Q8WY07 619 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 P2RX5Q93086 422 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 TMEM143Q96AN5 459 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 DHTKD1Q96HY7 919 aaPredicted RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 DUSP9Q99956 384 aaKnown RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 NTPCRQ9BSD7 190 aaKnown RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP4-210ENST00000483212 POLR3FQ9H1D9 316 aaPredicted RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 KCTD10Q9H3F6 313 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 ZHX3Q9H4I2 956 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 C17orf75Q9HAS0 396 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 HMX1Q9NP08 348 aaPredicted RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 LARSQ9P2J5 1176 aaKnown RBP9.11□□□□□ -0.95
USP4-210ENST00000483212 SCN10AQ9Y5Y9 1956 aa9.11□□□□□ -0.95
USP4-210ENST00000483212 SIP14410 1827 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 UBE4BO95155 1302 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 PSMA7O14818 248 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 MSCO60682 206 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 PRPF6O94906 941 aaKnown RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 HSPA1AP0DMV8 641 aaKnown RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 HSPA1BP0DMV9 641 aaKnown RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 KLRC1P26715 233 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 NAMPTP43490 491 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 NPTX2P47972 431 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 MRE11P49959 708 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 STX17P56962 302 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 GTF2BQ00403 316 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 KCNA1Q09470 495 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 TBC1D8BQ0IIM8 1120 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 PPFIA1Q13136 1202 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 CAPSQ13938 189 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 GRIK4Q16099 956 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 ZC2HC1CQ53FD0 456 aaPredicted RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 BRDTQ58F21 947 aaPredicted RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 GNASQ5JWF2 1037 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 CDKAL1Q5VV42 579 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms