RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 FAM209AQ5JX71 171 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 CD300LDQ6UXZ3 194 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 LRRC47Q8N1G4 583 aaKnown RBP5.66□□□□□ -1.5
VPS13A-210ENST00000471439 ZBTB38Q8NAP3 1195 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-210ENST00000471439 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13A-210ENST00000471439 SGSM3Q96HU1 749 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 ZSWIM3Q96MP5 696 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 RBPJLQ9UBG7 517 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 WASF3Q9UPY6 502 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 COA3Q9Y2R0 106 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-210ENST00000471439 TRAF6Q9Y4K3 522 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 NCOR1O75376 2440 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 PLEKHH1Q9ULM0 1364 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 TRPM7Q96QT4 1865 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 TRAV20A0A0B4J274 112 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 SH3D21A4FU49 640 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 IQCA1LA6NCM1 817 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 H7BY64 318 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 FGFR1P11362 822 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 GTF2A2P52657 109 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 CR1LQ2VPA4 569 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 STEAP3Q658P3 488 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 NSMFQ6X4W1 530 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 ZNF662Q6ZS27 426 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 TOM1L2Q6ZVM7 507 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 Q7L0L9 218 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 FAM126BQ8IXS8 530 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 SP8Q8IXZ3 490 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 PIP4K2CQ8TBX8 421 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 P2RX7Q99572 595 aaKnown RBP5.65□□□□□ -1.5
VPS13A-210ENST00000471439 LUC7LQ9NQ29 371 aaKnown RBP5.65□□□□□ -1.5
VPS13A-210ENST00000471439 GPR27Q9NS67 375 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 TMEM260Q9NX78 707 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 ZNF652Q9Y2D9 606 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 PCDHB4Q9Y5E5 795 aa5.65□□□□□ -1.5
VPS13A-210ENST00000471439 GPRASP1Q5JY77 1395 aa5.65□□□□□ -1.51
VPS13A-210ENST00000471439 ATRXP46100 2492 aa5.65□□□□□ -1.51
VPS13A-210ENST00000471439 TRANK1O15050 2925 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 BDP1A6H8Y1 2624 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 SETXQ7Z333 2677 aaKnown RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 DICER1Q9UPY3 1922 aaKnown RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 E9PCH4 1651 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 C5P01031 1676 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 TCRBV5S2A0A599 114 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 ENPP3O14638 875 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 SASH1O94885 1247 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 ITGA1P56199 1179 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 RTP5Q14D33 572 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 DALRD3Q5D0E6 543 aaKnown RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 EMC4Q5J8M3 183 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 NT5DC1Q5TFE4 455 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 CNTROBQ8N137 903 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 DEFB123Q8N688 67 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 C11orf84Q9BUA3 381 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 CCNL1Q9UK58 526 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 TOGARAM1Q9Y4F4 1720 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 RBBP6Q7Z6E9 1792 aaKnown RBP5.64□□□□□ -1.51
VPS13A-210ENST00000471439 ADAMTSL1Q8N6G6 1762 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 SCN4AP35499 1836 aa5.64□□□□□ -1.51
VPS13A-210ENST00000471439 TAF1LQ8IZX4 1826 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 HGSO14964 777 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-210ENST00000471439 PPP1R12AO14974 1030 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-210ENST00000471439 SLC27A2O14975 620 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 PRICKLE3O43900 615 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-210ENST00000471439 CDC45O75419 566 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 TADA3O75528 432 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 LTFP02788 710 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 COL6A2P12110 1019 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 GRK2P25098 689 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 THBS2P35442 1172 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 GRK3P35626 688 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 KCNC1P48547 511 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 CAP1Q01518 475 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 GRIN1Q05586 938 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 NFIXQ14938 502 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 C21orf62-AS1Q17RA5 79 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 EGFLAMQ63HQ2 1017 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 CARFQ8N187 725 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 LINC00482Q8N8I6 264 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 KISS1RQ969F8 398 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-210ENST00000471439 KCNJ15Q99712 375 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 EPB41L1Q9H4G0 881 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 DDX21Q9NR30 783 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS13A-210ENST00000471439 RTEL1Q9NZ71 1219 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 DTLQ9NZJ0 730 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 MYOTQ9UBF9 498 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 DUSP10Q9Y6W6 482 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 AKAP11Q9UKA4 1901 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 CPDO75976 1380 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 HTTP42858 3142 aa5.63□□□□□ -1.51
VPS13A-210ENST00000471439 SCN11AQ9UI33 1791 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 UBR3Q6ZT12 1888 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 NKRFO15226 690 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 DGKIO75912 1065 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 DDNO94850 711 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 ASMTLO95671 621 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 MMP10P09238 476 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 C6orf222P0C671 652 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 BUD31P41223 144 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 ADAM9Q13443 819 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms