RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 DACT1Q9NYF0 836 aa17.35■□□□□ 0.37
SKA3-204ENST00000462482 USP15Q9Y4E8 981 aaPredicted RBP17.35■□□□□ 0.37
SKA3-204ENST00000462482 TTC3P53804 2025 aa17.35■□□□□ 0.37
SKA3-204ENST00000462482 PER2O15055 1255 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 ADAMTS3O15072 1205 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 PLCB3Q01970 1234 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 NTRK3Q16288 839 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 TBCKQ8TEA7 893 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 SLC5A5Q92911 643 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 LENG9Q96B70 501 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 GCOM2Q9BZD3 368 aaPredicted RBP17.34■□□□□ 0.37
SKA3-204ENST00000462482 ADAMTS10Q9H324 1103 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 NCOA5Q9HCD5 579 aaKnown RBP17.34■□□□□ 0.37
SKA3-204ENST00000462482 PCDHA4Q9UN74 947 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 PCDHGC5Q9Y5F6 944 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 CYP46A1Q9Y6A2 500 aa17.34■□□□□ 0.37
SKA3-204ENST00000462482 ZNF862O60290 1169 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 DARSP14868 501 aaKnown RBP17.33■□□□□ 0.36
SKA3-204ENST00000462482 GPC3P51654 580 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 ERVFC1P60507 584 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 DUSP6Q16828 381 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 XKR3Q5GH77 459 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 PLPP4Q5VZY2 271 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 KCNT2Q6UVM3 1135 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 RUFY3Q7L099 469 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 TMC7Q7Z402 723 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 ECHDC2Q86YB7 292 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 CASD1Q96PB1 797 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 TCF25Q9BQ70 676 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 PHF7Q9BWX1 381 aaPredicted RBP17.33■□□□□ 0.36
SKA3-204ENST00000462482 MRPL9Q9BYD2 267 aaKnown RBP17.33■□□□□ 0.36
SKA3-204ENST00000462482 UNC45AQ9H3U1 944 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 CWH43Q9H720 699 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 SPG21Q9NZD8 308 aa17.33■□□□□ 0.36
SKA3-204ENST00000462482 SEPT9Q9UHD8 586 aaPredicted RBP17.33■□□□□ 0.36
SKA3-204ENST00000462482 DEXIO95424 95 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 GLP2RO95838 553 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 EOMESO95936 686 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 ATF7P17544 494 aaPredicted RBP17.32■□□□□ 0.36
SKA3-204ENST00000462482 EVCP57679 992 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 Q4G0T1 1027 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 GALNT17Q6IS24 598 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 FAM177A1Q8N128 213 aaPredicted RBP17.32■□□□□ 0.36
SKA3-204ENST00000462482 LINC01465Q8N7H1 131 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 TMEM87AQ8NBN3 555 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 EDAQ92838 391 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 ZNF668Q96K58 619 aaPredicted RBP17.32■□□□□ 0.36
SKA3-204ENST00000462482 RPGRIP1Q96KN7 1286 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 JPH2Q9BR39 696 aaPredicted RBP17.32■□□□□ 0.36
SKA3-204ENST00000462482 INO80BQ9C086 356 aaPredicted RBP17.32■□□□□ 0.36
SKA3-204ENST00000462482 HCSTQ9UBK5 93 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 NLRC5Q86WI3 1866 aa17.32■□□□□ 0.36
SKA3-204ENST00000462482 CARNS1A5YM72 827 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 LOC730098B7Z3J9 87 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 FSCN2O14926 492 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 EPB41L2O43491 1005 aaKnown RBP17.31■□□□□ 0.36
SKA3-204ENST00000462482 SFPQP23246 707 aaKnown RBP eCLIP17.31■□□□□ 0.36
SKA3-204ENST00000462482 CA8P35219 290 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 TECP42680 631 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 MTERF2Q49AM1 385 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 HFE2Q6ZVN8 426 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 BLIDQ8IZY5 108 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 RSPH1Q8WYR4 309 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 CHST12Q9NRB3 414 aa17.31■□□□□ 0.36
SKA3-204ENST00000462482 A0A0U1RQF3 1178 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 DDX11L8A8MPP1 907 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 DKC1O60832 514 aaKnown RBP eCLIP17.3■□□□□ 0.36
SKA3-204ENST00000462482 PSMD10O75832 226 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 SKIP12755 728 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 HOXB8P17481 243 aaPredicted RBP17.3■□□□□ 0.36
SKA3-204ENST00000462482 ALDH7A1P49419 539 aaKnown RBP17.3■□□□□ 0.36
SKA3-204ENST00000462482 SMC1AQ14683 1233 aaKnown RBP17.3■□□□□ 0.36
SKA3-204ENST00000462482 NONOQ15233 471 aaKnown RBP eCLIP17.3■□□□□ 0.36
SKA3-204ENST00000462482 UGCGQ16739 394 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 ZNF274Q96GC6 653 aaPredicted RBP17.3■□□□□ 0.36
SKA3-204ENST00000462482 NIFKQ9BYG3 293 aaKnown RBP17.3■□□□□ 0.36
SKA3-204ENST00000462482 ZSWIM6Q9HCJ5 1215 aa17.3■□□□□ 0.36
SKA3-204ENST00000462482 CYP3A7-CYP3A51PA0A087WV96 503 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 CDKL5O76039 1030 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 XBP1P17861 261 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 FGFR4P22455 802 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 CYP3A7P24462 503 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 CBX2Q14781 532 aaPredicted RBP17.29■□□□□ 0.36
SKA3-204ENST00000462482 TPRNQ4KMQ1 711 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 TWF2Q6IBS0 349 aaKnown RBP17.29■□□□□ 0.36
SKA3-204ENST00000462482 ANKRD54Q6NXT1 300 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 LLGL2Q6P1M3 1020 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 MOXD1Q6UVY6 613 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 TMEM184AQ6ZMB5 413 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 TRIM67Q6ZTA4 783 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 KRT25Q7Z3Z0 450 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 ALYREFQ86V81 257 aaKnown RBP17.29■□□□□ 0.36
SKA3-204ENST00000462482 SUGP1Q8IWZ8 645 aaKnown RBP17.29■□□□□ 0.36
SKA3-204ENST00000462482 EXOC8Q8IYI6 725 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 HELQQ8TDG4 1101 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 CASP10Q92851 521 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 PBXIP1Q96AQ6 731 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 TMEM169Q96HH4 297 aa17.29■□□□□ 0.36
SKA3-204ENST00000462482 SLKQ9H2G2 1235 aaPredicted RBP17.29■□□□□ 0.36
SKA3-204ENST00000462482 DDX25Q9UHL0 483 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms