RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 KRT35Q92764 455 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 PWWP2AQ96N64 755 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 SH3GL3Q99963 347 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.67□□□□□ -0.386e-9■■■■■ 134.6
CPSF3-202ENST00000460593 GRHL1Q9NZI5 618 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 SUCLA2Q9P2R7 463 aaPredicted RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CASZ1Q86V15 1759 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CACNA1SQ13698 1873 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 STAT3P40763 770 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 EIF6P56537 245 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 BNIP1Q12981 228 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 DIXDC1Q155Q3 683 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 EXOC3L4Q17RC7 722 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CAVIN4Q5BKX8 364 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CLEC10AQ8IUN9 316 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 PGM2Q96G03 612 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 NAF1Q96HR8 494 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ETNK1Q9HBU6 452 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 EMILIN3Q9NT22 766 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ZFATQ9P243 1243 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 STK17AQ9UEE5 414 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 PALM3A6NDB9 673 aaPredicted RBP12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CES2O00748 559 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 FLOT1O75955 427 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 KRT18P05783 430 aaKnown RBP12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CALRP27797 417 aaKnown RBP12.66□□□□□ -0.38
CPSF3-202ENST00000460593 PTENP60484 403 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 KCNA1Q09470 495 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 GALNTL6Q49A17 601 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 GPBP1Q86WP2 473 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CCHCR1Q8TD31 782 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 RAB17Q9H0T7 212 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CCDC88AQ3V6T2 1871 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 A0A1B0GVG6 124 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 MEIS1O00470 390 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 NUDT17P0C025 328 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 GNAT1P11488 350 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 ADCY2Q08462 1091 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 TMEM266Q2M3C6 531 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CGB2Q6NT52 195 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 SLFN11Q7Z7L1 901 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 MAPKAPK5Q8IW41 473 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 PROM2Q8N271 834 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CNKSR1Q969H4 720 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 NSRP1Q9H0G5 558 aaKnown RBP12.66□□□□□ -0.38
CPSF3-202ENST00000460593 KCTD10Q9H3F6 313 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 CORO1CQ9ULV4 474 aaPredicted RBP12.66□□□□□ -0.38
CPSF3-202ENST00000460593 ZNF804BA4D1E1 1349 aa12.66□□□□□ -0.38
CPSF3-202ENST00000460593 TAF1P21675 1872 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 OAS1P00973 400 aaKnown RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 GM2AP17900 193 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ATF3P18847 181 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PDE6CP51160 858 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 SEMA3FQ13275 785 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 IFI16Q16666 785 aaKnown RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ANO7Q6IWH7 933 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 TXNRD3Q86VQ6 643 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 DGKHQ86XP1 1220 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PAIP2Q9BPZ3 127 aaKnown RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ARHGEF3Q9NR81 526 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 COG5Q9UP83 839 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 USP17L5A8MUK1 530 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PCK1P35558 622 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 SESN3P58005 492 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 LACTBP83111 547 aaPredicted RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ATP11AP98196 1134 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PLS1Q14651 629 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 BICDL1Q6ZP65 573 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PRUNE1Q86TP1 453 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ZNF444Q8N0Y2 327 aaPredicted RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 TGFBRAP1Q8WUH2 860 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 CELF1Q92879 486 aaKnown RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ARHGEF2Q92974 986 aaKnown RBP12.65□□□□□ -0.38
CPSF3-202ENST00000460593 ADAM33Q9BZ11 813 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 THAP2Q9H0W7 228 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 USP40Q9NVE5 1235 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 PCDHB13Q9Y5F0 798 aa12.65□□□□□ -0.38
CPSF3-202ENST00000460593 CETN3O15182 167 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 RIPK2O43353 540 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SMIM24O75264 130 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 AKAP3O75969 853 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SUN1O94901 812 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SNUPNO95149 360 aaKnown RBP12.65□□□□□ -0.39
CPSF3-202ENST00000460593 TARSP26639 723 aaKnown RBP12.65□□□□□ -0.39
CPSF3-202ENST00000460593 RAD23BP54727 409 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 EVA1CP58658 441 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 GRIK5Q16478 980 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SPATA21Q7Z572 469 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 LONP2Q86WA8 852 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 TTC8Q8TAM2 541 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SPOCK2Q92563 424 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 ETAA1Q9NY74 926 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 GCNT4Q9P109 453 aa12.65□□□□□ -0.39
CPSF3-202ENST00000460593 SEC63Q9UGP8 760 aaKnown RBP12.65□□□□□ -0.39
CPSF3-202ENST00000460593 ARMCX3Q9UH62 379 aaPredicted RBP12.65□□□□□ -0.39
CPSF3-202ENST00000460593 PFASO15067 1338 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 A6NHS1 94 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 AGTP01019 485 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 PCP11498 1178 aaKnown RBP12.64□□□□□ -0.39
CPSF3-202ENST00000460593 GNA11P29992 359 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms