RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TRANK1O15050 2925 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 ADGRA3Q8IWK6 1321 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 RFC5P40937 340 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 NPEPPSP55786 919 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 BTG3Q14201 252 aaPredicted RBP25.72■■□□□ 1.71
PTPN4-208ENST00000460289 EPC2Q52LR7 807 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 GDPD5Q8WTR4 605 aa25.72■■□□□ 1.71
PTPN4-208ENST00000460289 GCOM2Q9BZD3 368 aaPredicted RBP25.72■■□□□ 1.71
PTPN4-208ENST00000460289 MGEA5O60502 916 aa25.71■■□□□ 1.71
PTPN4-208ENST00000460289 CD2BP2O95400 341 aaKnown RBP25.71■■□□□ 1.71
PTPN4-208ENST00000460289 DARSP14868 501 aaKnown RBP25.71■■□□□ 1.71
PTPN4-208ENST00000460289 ZSCAN20P17040 1043 aaPredicted RBP25.71■■□□□ 1.71
PTPN4-208ENST00000460289 U2AF2P26368 475 aaKnown RBP eCLIP25.71■■□□□ 1.713e-6■■■□□ 15.4
PTPN4-208ENST00000460289 POLGP54098 1239 aaPredicted RBP25.71■■□□□ 1.71
PTPN4-208ENST00000460289 DRP2Q13474 957 aa25.71■■□□□ 1.71
PTPN4-208ENST00000460289 ZNF174Q15697 407 aa25.71■■□□□ 1.71
PTPN4-208ENST00000460289 TTC38Q5R3I4 469 aa25.71■■□□□ 1.71
PTPN4-208ENST00000460289 TMEM60Q9H2L4 133 aa25.71■■□□□ 1.71
PTPN4-208ENST00000460289 LYPLA2O95372 231 aa25.7■■□□□ 1.7
PTPN4-208ENST00000460289 XKR9Q5GH70 373 aa25.7■■□□□ 1.7
PTPN4-208ENST00000460289 ZNF410Q86VK4 478 aa25.7■■□□□ 1.7
PTPN4-208ENST00000460289 RHPN2Q8IUC4 686 aa25.7■■□□□ 1.7
PTPN4-208ENST00000460289 CMTR2Q8IYT2 770 aaKnown RBP25.7■■□□□ 1.7
PTPN4-208ENST00000460289 ZNF668Q96K58 619 aaPredicted RBP25.7■■□□□ 1.7
PTPN4-208ENST00000460289 INO80BQ9C086 356 aaPredicted RBP25.7■■□□□ 1.7
PTPN4-208ENST00000460289 DHX33Q9H6R0 707 aaKnown RBP25.7■■□□□ 1.7
PTPN4-208ENST00000460289 C9IYK1 514 aa25.69■■□□□ 1.7
PTPN4-208ENST00000460289 H3BNC9 293 aa25.69■■□□□ 1.7
PTPN4-208ENST00000460289 GAS2O43903 313 aaKnown RBP25.69■■□□□ 1.7
PTPN4-208ENST00000460289 RB1P06400 928 aa25.69■■□□□ 1.7
PTPN4-208ENST00000460289 FAM189BP81408 668 aa25.69■■□□□ 1.7
PTPN4-208ENST00000460289 ZNF579Q8NAF0 562 aaKnown RBP25.69■■□□□ 1.7
PTPN4-208ENST00000460289 CLP1Q92989 425 aaKnown RBP25.69■■□□□ 1.7
PTPN4-208ENST00000460289 PRUNE2Q8WUY3 3088 aa25.69■■□□□ 1.7
PTPN4-208ENST00000460289 A0A0C4DFX4 3053 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 A0A087WZ62 844 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 OR52Z1P0C646 297 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 BMPR1AP36894 532 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 DSC3Q14574 896 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 PTPROQ16827 1216 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 TCP11Q8WWU5 503 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 FDXACB1Q9BRP7 624 aaPredicted RBP25.68■■□□□ 1.7
PTPN4-208ENST00000460289 BACH2Q9BYV9 841 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 ELAC1Q9H777 363 aaKnown RBP25.68■■□□□ 1.7
PTPN4-208ENST00000460289 ANKEF1Q9NU02 776 aa25.68■■□□□ 1.7
PTPN4-208ENST00000460289 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.68■■□□□ 1.7
PTPN4-208ENST00000460289 POTEMA6NI47 508 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 C5orf67F2Z3F1 127 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 ZBTB39O15060 712 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 XRCC6P12956 609 aaKnown RBP eCLIP25.67■■□□□ 1.7
PTPN4-208ENST00000460289 IBSPP21815 317 aaPredicted RBP25.67■■□□□ 1.7
PTPN4-208ENST00000460289 GJB2P29033 226 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 CTNNB1P35222 781 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 TECP42680 631 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 GPM6BQ13491 265 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 SKIV2LQ15477 1246 aaKnown RBP25.67■■□□□ 1.7
PTPN4-208ENST00000460289 PSPC1Q8WXF1 523 aaKnown RBP25.67■■□□□ 1.7
PTPN4-208ENST00000460289 TMEM161AQ9NX61 479 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 THEGQ9P2T0 379 aa25.67■■□□□ 1.7
PTPN4-208ENST00000460289 PRRC2BQ5JSZ5 2229 aaKnown RBP25.67■■□□□ 1.7
PTPN4-208ENST00000460289 ASAP2O43150 1006 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 SFPQP23246 707 aaKnown RBP eCLIP25.66■■□□□ 1.7
PTPN4-208ENST00000460289 ERMNQ8TAM6 284 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 ATXN2LQ8WWM7 1075 aaKnown RBP25.66■■□□□ 1.7
PTPN4-208ENST00000460289 PRPF31Q8WWY3 499 aaKnown RBP25.66■■□□□ 1.7
PTPN4-208ENST00000460289 CCDC43Q96MW1 224 aaKnown RBP25.66■■□□□ 1.7
PTPN4-208ENST00000460289 C11orf84Q9BUA3 381 aaPredicted RBP25.66■■□□□ 1.7
PTPN4-208ENST00000460289 PLVAPQ9BX97 442 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 ATP6V0A4Q9HBG4 840 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 PRDM6Q9NQX0 595 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 CHST12Q9NRB3 414 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 SMC3Q9UQE7 1217 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 COL4A3BPQ9Y5P4 624 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 UNC80Q8N2C7 3258 aa25.66■■□□□ 1.7
PTPN4-208ENST00000460289 H3BQV1 296 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 EMC2Q15006 297 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 MCTP1Q6DN14 999 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 KSR1Q8IVT5 923 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 TMEM143Q96AN5 459 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 NLRP4Q96MN2 994 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 MTRQ99707 1265 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 TUFT1Q9NNX1 390 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 DACT1Q9NYF0 836 aa25.65■■□□□ 1.7
PTPN4-208ENST00000460289 CSDE1O75534 798 aaKnown RBP25.64■■□□□ 1.7
PTPN4-208ENST00000460289 DGAT1O75907 488 aa25.64■■□□□ 1.7
PTPN4-208ENST00000460289 LINC00271P0C7V0 271 aa25.64■■□□□ 1.7
PTPN4-208ENST00000460289 FGFR4P22455 802 aa25.64■■□□□ 1.7
PTPN4-208ENST00000460289 PAN2Q504Q3 1202 aaKnown RBP25.64■■□□□ 1.7
PTPN4-208ENST00000460289 MRPL38Q96DV4 380 aaKnown RBP25.64■■□□□ 1.7
PTPN4-208ENST00000460289 POLR3CQ9BUI4 534 aaPredicted RBP25.64■■□□□ 1.7
PTPN4-208ENST00000460289 MRPL42Q9Y6G3 142 aaKnown RBP25.64■■□□□ 1.7
PTPN4-208ENST00000460289 DLL1O00548 723 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 HOXA2O43364 376 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 SPATA31C1P0DKV0 1188 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 TOB1P50616 345 aaPredicted RBP25.63■■□□□ 1.69
PTPN4-208ENST00000460289 FAM102BQ5T8I3 360 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 CATSPER3Q86XQ3 398 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 C4orf32Q8N8J7 132 aa25.63■■□□□ 1.69
PTPN4-208ENST00000460289 A0A0U1RQF3 1178 aa25.62■■□□□ 1.69
PTPN4-208ENST00000460289 TBKBP1A7MCY6 615 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms