RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ZNF341Q9BYN7 854 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SH3GLB2Q9NR46 395 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SWAP70Q9UH65 585 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PCDHA6Q9UN73 950 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PCDHA8Q9Y5H6 950 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 BHMG1C9JSJ3 638 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 KCNK3O14649 394 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 BUB1BO60566 1050 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 FLT3P36888 993 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PRPHP41219 470 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 ZNF157P51786 506 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 KCNMA1Q12791 1236 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 RPS6KA1Q15418 735 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SLC4A8Q2Y0W8 1093 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 TATDN1Q6P1N9 297 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SCFD2Q8WU76 684 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 M0R2N6 131 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 CES2O00748 559 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PCP11498 1178 aaKnown RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 SHMT1P34896 483 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 KIAA0753Q2KHM9 967 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 RCSD1Q6JBY9 416 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 ANKRD13AQ8IZ07 590 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PROCA1Q8NCQ7 364 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 CCDC197Q8NCU1 140 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 TBC1D5Q92609 795 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SYN2Q92777 582 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 CHMP6Q96FZ7 201 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 AK8Q96MA6 479 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 XPO6Q96QU8 1125 aaKnown RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 TANGO6Q9C0B7 1094 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 NUCKS1Q9H1E3 243 aaKnown RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.32□□□□□ -0.92
HPS4-206ENST00000439453 CEP72Q9P209 647 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 COL11A1P12107 1806 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 SPDYE5A6NIY4 337 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 IREB2P48200 963 aaKnown RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 IRX1P78414 480 aaPredicted RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 KRT71Q3SY84 523 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 STAMBPL1Q96FJ0 436 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 ELP3Q9H9T3 547 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 SLC18A3Q16572 532 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 FAM47AQ5JRC9 791 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 CCDC63Q8NA47 563 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 MDM1Q8TC05 714 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 PBKQ96KB5 322 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.31□□□□□ -0.92
HPS4-206ENST00000439453 PACSIN1Q9BY11 444 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 DHX36Q9H2U1 1008 aaKnown RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 CNOT10Q9H9A5 744 aaKnown RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 EBF2Q9HAK2 575 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 TESPA1A2RU30 521 aaPredicted RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 SART1O43290 800 aaKnown RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 CEP104O60308 925 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 KIF5BP33176 963 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 MYO1EQ12965 1108 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 FAM83BQ5T0W9 1011 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 ERMARDQ5T6L9 678 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 CRELD2Q6UXH1 353 aaPredicted RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 CEP120Q8N960 986 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 NSMCE1Q8WV22 266 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 ANKS1AQ92625 1134 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 OPTNQ96CV9 577 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 PTPN18Q99952 460 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 AP1M1Q9BXS5 423 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 CRNKL1Q9BZJ0 848 aaKnown RBP9.31□□□□□ -0.92
HPS4-206ENST00000439453 FAM129AQ9BZQ8 928 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 ATP8A2Q9NTI2 1148 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 WBP1LQ9NX94 342 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 PI4KBQ9UBF8 816 aa9.31□□□□□ -0.92
HPS4-206ENST00000439453 PLXNB2O15031 1838 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 A0A087X0T9 212 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 NOL4O94818 638 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 KIF4AO95239 1232 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 GSTA1P08263 222 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 FAM228BP0C875 321 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 TTLL12Q14166 644 aaPredicted RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 ZKSCAN8Q15776 578 aaPredicted RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 C12orf60Q5U649 245 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 LRRC55Q6ZSA7 311 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 TMC3Q7Z5M5 1100 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 ACTRT1Q8TDG2 376 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 TCP11Q8WWU5 503 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 CENPTQ96BT3 561 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.3□□□□□ -0.92
HPS4-206ENST00000439453 CASP8AP2Q9UKL3 1982 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 DAPK3O43293 454 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 SKAP2O75563 359 aaPredicted RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 OR52Z1P0C646 297 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 CCNHP51946 323 aaPredicted RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 POLR2FP61218 127 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 LRRC63Q05C16 580 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 GRIK3Q13003 919 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 RIPK1Q13546 671 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 DCAF15Q66K64 600 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 GUF1Q8N442 669 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 ANKS4BQ8N8V4 417 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 SLC44A5Q8NCS7 719 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 TLCD1Q96CP7 247 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 THOC1Q96FV9 657 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms