RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 NLRC4Q9NPP4 1024 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 FAM53CQ9NYF3 392 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TRIM10Q9UDY6 481 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TCEAL9Q9UHQ7 104 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 PUF60Q9UHX1 559 aaKnown RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 JRKLQ9Y4A0 524 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 DAAM1Q9Y4D1 1078 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 ASTN1O14525 1302 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 ADGRA2Q96PE1 1338 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 ZNF263O14978 683 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TGFB1I1O43294 461 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 AKAP3O75969 853 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 PLEKP08567 350 aaPredicted RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 ERCC3P19447 782 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 ANXA13P27216 316 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 SFNP31947 248 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 QARSP47897 775 aaKnown RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 JAK3P52333 1124 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 RPS6P62753 249 aaKnown RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 IRX3P78415 501 aaPredicted RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 CBX1P83916 185 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 GRM1Q13255 1194 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 PGM5Q15124 567 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TDRD12Q587J7 1177 aaKnown RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 ODR4Q5SWX8 454 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 FMNL3Q8IVF7 1028 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 MSANTD4Q8NCY6 345 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 SLC17A8Q8NDX2 589 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 RDM1Q8NG50 284 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TAAR1Q96RJ0 339 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 GBP3Q9H0R5 595 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 GANQ9H2C0 597 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 TMEM206Q9H813 350 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 LARSQ9P2J5 1176 aaKnown RBP14.05□□□□□ -0.16
DDX56-204ENST00000431640 RBPJLQ9UBG7 517 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 FRMD4BQ9Y2L6 1034 aa14.05□□□□□ -0.16
DDX56-204ENST00000431640 ZSWIM8A7E2V4 1837 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 CCDC151A5D8V7 595 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 RCCD1A6NED2 376 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 SPDYE4A6NLX3 237 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 NMT1P30419 496 aaKnown RBP14.04□□□□□ -0.16
DDX56-204ENST00000431640 SNRPFP62306 86 aaKnown RBP14.04□□□□□ -0.16
DDX56-204ENST00000431640 MRPS9P82933 396 aaKnown RBP14.04□□□□□ -0.16
DDX56-204ENST00000431640 ASIC2Q16515 512 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 ARHGEF16Q5VV41 709 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 IQCEQ6IPM2 695 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 PADI6Q6TGC4 694 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 NLRX1Q86UT6 975 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 SLC9A9Q8IVB4 645 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 FAM186BQ8IYM0 893 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 KRT222Q8N1A0 295 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 BANK1Q8NDB2 785 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 TMEM174Q8WUU8 243 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 HNRNPLLQ8WVV9 542 aaKnown RBP14.04□□□□□ -0.16
DDX56-204ENST00000431640 RMDN3Q96TC7 470 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 CRACR2AQ9BSW2 395 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 ARFGAP3Q9NP61 516 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 SAMM50Q9Y512 469 aa14.04□□□□□ -0.16
DDX56-204ENST00000431640 MANSC4A6NHS7 340 aaPredicted RBP14.03□□□□□ -0.16
DDX56-204ENST00000431640 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
DDX56-204ENST00000431640 ATP2A1O14983 1001 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 ZBTB39O15060 712 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 CLIC2O15247 247 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 DKC1O60832 514 aaKnown RBP eCLIP14.03□□□□□ -0.16
DDX56-204ENST00000431640 ERLIN1O75477 346 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 ZRANB2O95218 330 aaKnown RBP eCLIP14.03□□□□□ -0.16
DDX56-204ENST00000431640 MCM3P25205 808 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 PON1P27169 355 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 CCND2P30279 289 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 KRT76Q01546 638 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 KLHL30Q0D2K2 578 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 RAPGEF1Q13905 1077 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 PPP2R5AQ15172 486 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 Q3C1V9 767 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 KLHDC7AQ5VTJ3 777 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 TCERG1LQ5VWI1 586 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 SNRNP48Q6IEG0 339 aaKnown RBP14.03□□□□□ -0.16
DDX56-204ENST00000431640 SLC30A10Q6XR72 485 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 C4orf19Q8IY42 314 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 BORCS6Q96GS4 357 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 ZFP91Q96JP5 570 aaPredicted RBP14.03□□□□□ -0.16
DDX56-204ENST00000431640 CAPNS2Q96L46 248 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 FIZ1Q96SL8 496 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 IWS1Q96ST2 819 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 ARID3AQ99856 593 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 PDCD2LQ9BRP1 358 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 PAGR1Q9BTK6 254 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 STRA6Q9BX79 667 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 PXMP2Q9NR77 195 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 HOMER2Q9NSB8 354 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 ANKEF1Q9NU02 776 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 DMAC2Q9NW81 257 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 WRAP73Q9P2S5 460 aaPredicted RBP14.03□□□□□ -0.16
DDX56-204ENST00000431640 TSKSQ9UJT2 592 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 SLC45A1Q9Y2W3 748 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 LRRC37A2A6NM11 1700 aa14.03□□□□□ -0.16
DDX56-204ENST00000431640 MACROD2A1Z1Q3 448 aa14.02□□□□□ -0.16
DDX56-204ENST00000431640 HIP1RO75146 1068 aa14.02□□□□□ -0.16
DDX56-204ENST00000431640 ATP1A1P05023 1023 aaKnown RBP14.02□□□□□ -0.16
DDX56-204ENST00000431640 MYCLP12524 364 aaPredicted RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms