RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 CDC42BPGQ6DT37 1551 aa13.67□□□□□ -0.22
LDB3-205ENST00000429277 ZFXP17010 805 aaPredicted RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 SDC4P31431 198 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 CXCR5P32302 372 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 NNMTP40261 264 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 MCAMP43121 646 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 GRM4Q14833 912 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 RWDD4Q6NW29 188 aaKnown RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 PI16Q6UXB8 463 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 MYCBPQ99417 103 aaPredicted RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 UBE4BO95155 1302 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 ASAP2O43150 1006 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 CTIFO43310 598 aaKnown RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 SLC26A4O43511 780 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 COBLO75128 1261 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 EEPD1Q7L9B9 569 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 THNSL1Q8IYQ7 743 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 TMEM47Q9BQJ4 181 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 FSD1LQ9BXM9 530 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 TBK1Q9UHD2 729 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 ROBO2Q9HCK4 1378 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 GOLGA8IPA6NC78 632 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 GOLGA8JA6NMD2 632 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 SNX2O60749 519 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 CDC25AP30304 524 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 ZNF568Q3ZCX4 644 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 GAS2L3Q86XJ1 694 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 CXorf38Q8TB03 319 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 HSPH1Q92598 858 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 ZWILCHQ9H900 591 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 IP6K2Q9UHH9 426 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 APOBEC2Q9Y235 224 aaKnown RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 PLEKHA8P1O95397 391 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 QARSP47897 775 aaKnown RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 MIGA2Q7L4E1 593 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 NOP9Q86U38 636 aaKnown RBP13.66□□□□□ -0.22
LDB3-205ENST00000429277 IRAK4Q9NWZ3 460 aa13.66□□□□□ -0.22
LDB3-205ENST00000429277 MMP10P09238 476 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 STAT3P40763 770 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 SLCO1A2P46721 670 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 KNOP1Q1ED39 458 aaKnown RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 EFHBQ8N7U6 833 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 IFT43Q96FT9 208 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 PITPNM3Q9BZ71 974 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 SAYSD1Q9NPB0 183 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 NDE1Q9NXR1 346 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 SEC31AO94979 1220 aaKnown RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 MYL3P08590 195 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 HOXD10P28358 340 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 SFR1Q86XK3 245 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 KIRREL3Q8IZU9 778 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 FAM49AQ9H0Q0 323 aaPredicted RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 ZNF302Q9NR11 478 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 FAM187AA6NFU0 413 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 AP3B1O00203 1094 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 CHRNA3P32297 505 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 TMPRSS15P98073 1019 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 CDC42EP1Q00587 391 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 CYP27A1Q02318 531 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 CDKL3Q8IVW4 592 aaPredicted RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 TTC8Q8TAM2 541 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 MAML1Q92585 1016 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 USP17L10C9JJH3 530 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 USP11P51784 963 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 NFX1Q12986 1120 aaKnown RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 TTC23LQ6PF05 361 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 GUF1Q8N442 669 aaKnown RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 LRRC37BQ96QE4 947 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 MRPL4Q9BYD3 311 aaKnown RBP13.65□□□□□ -0.22
LDB3-205ENST00000429277 MROH7-TTC4A0A0A0MT08 1334 aa13.65□□□□□ -0.22
LDB3-205ENST00000429277 PSMC5P62195 406 aa13.65□□□□□ -0.23
LDB3-205ENST00000429277 TBC1D10BQ4KMP7 808 aaPredicted RBP13.65□□□□□ -0.23
LDB3-205ENST00000429277 TTC19Q6DKK2 380 aaPredicted RBP13.65□□□□□ -0.23
LDB3-205ENST00000429277 SH3RF3Q8TEJ3 882 aaPredicted RBP13.65□□□□□ -0.23
LDB3-205ENST00000429277 RUBCNQ92622 972 aa13.65□□□□□ -0.23
LDB3-205ENST00000429277 KIF2CQ99661 725 aa13.65□□□□□ -0.23
LDB3-205ENST00000429277 ABHD10Q9NUJ1 306 aa13.65□□□□□ -0.23
LDB3-205ENST00000429277 FARP1Q9Y4F1 1045 aaPredicted RBP13.65□□□□□ -0.23
LDB3-205ENST00000429277 TRIP13Q15645 432 aaPredicted RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 ZNF560Q96MR9 790 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 MMTAG2Q9BU76 263 aaKnown RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 AP1M1Q9BXS5 423 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 ALDH8A1Q9H2A2 487 aaPredicted RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 OLA1Q9NTK5 396 aaKnown RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 HERC5Q9UII4 1024 aaKnown RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 ABT1Q9ULW3 272 aaKnown RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 FIS1Q9Y3D6 152 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 A2ML1A8K2U0 1454 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 CYP2D7A0A087X1C5 515 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 SPAG7O75391 227 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 ZMYND10O75800 440 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 EEF1B2P24534 225 aaKnown RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 CDO1Q16878 200 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 NBPF9Q3BBW0 867 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 PPP6R3Q5H9R7 873 aaPredicted RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 HP1BP3Q5SSJ5 553 aaPredicted RBP13.64□□□□□ -0.23
LDB3-205ENST00000429277 AP1ARQ63HQ0 302 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 NUGGCQ68CJ6 796 aa13.64□□□□□ -0.23
LDB3-205ENST00000429277 ST13P4Q8IZP2 240 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms