RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ZBTB7AO95365 584 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 ASMTLO95671 621 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 HSP90AB1P08238 724 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 HMGB2P26583 209 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 DNM2P50570 870 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 AFF3P51826 1226 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 EMC4Q5J8M3 183 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 FSTL4Q6MZW2 842 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 DEFB132Q7Z7B7 95 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 MIB1Q86YT6 1006 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 SH3RF2Q8TEC5 729 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 FNIP1Q8TF40 1166 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF526Q8TF50 670 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CLEC4DQ8WXI8 215 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TOX2Q96NM4 488 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 GORASP1Q9BQQ3 440 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 RNF38Q9H0F5 515 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 FANCLQ9NW38 375 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TMA7Q9Y2S6 64 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CD2APQ9Y5K6 639 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 PMF1-BGLAPU3KQ54 211 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 FAM208AQ9UK61 1670 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 PARP4Q9UKK3 1724 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 KDRP35968 1356 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 MAP2P11137 1827 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CCDC66A2RUB6 948 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 ARVCFO00192 962 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 KCNQ2O43526 872 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TADA3O75528 432 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 PHKG2P15735 406 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CANXP27824 592 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CACNB2Q08289 660 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CR1LQ2VPA4 569 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 B3GNT8Q7Z7M8 397 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 OSTM1Q86WC4 334 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 PTRH1Q86Y79 214 aaKnown RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 GSTCDQ8NEC7 633 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 DACT3Q96B18 629 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TRIM39Q9HCM9 518 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TMEM260Q9NX78 707 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 ASH2LQ9UBL3 628 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 DSEQ9UL01 958 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 WASF3Q9UPY6 502 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 MEGF6O75095 1541 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 BRWD3Q6RI45 1802 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 RFXAPO00287 272 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 SMARCA5O60264 1052 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 HMOX1P09601 288 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 U2AF1L5P0DN76 240 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 CYP2C8P10632 490 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ITGA1P56199 1179 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 JAM2P57087 298 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ST5P78524 1137 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 U2AF1Q01081 240 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 SPIRE1Q08AE8 756 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TUSC3Q13454 348 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 EZH2Q15910 746 aaKnown RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF385BQ569K4 471 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 C1orf141Q5JVX7 400 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 CPZQ66K79 652 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF530Q6P9A1 599 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ARHGAP36Q6ZRI8 547 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 KRTAP1-3Q8IUG1 177 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 UHMK1Q8TAS1 419 aaKnown RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 PNNQ9H307 717 aaKnown RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 PRKRIP1Q9H875 184 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 DTLQ9NZJ0 730 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 MYBBP1AQ9BQG0 1328 aaKnown RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ARID1BQ8NFD5 2236 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 LRRC37A3O60309 1634 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ERVV-2B6SEH9 535 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 RTP5Q14D33 572 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 VWA3BQ502W6 1294 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TM4SF20Q53R12 229 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TRIM61Q5EBN2 209 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TCERG1LQ5VWI1 586 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TEPPQ6URK8 271 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TMC5Q6UXY8 1006 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 KCTD1Q719H9 257 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 PTF1AQ7RTS3 328 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 FAM126BQ8IXS8 530 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 SYT8Q8NBV8 401 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 MAGEB10Q96LZ2 347 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-208ENST00000423463 SMOC1Q9H4F8 434 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 ADAMTS20P59510 1910 aa3.24□□□□□ -1.89
VPS13A-208ENST00000423463 TCRBV16S1A1N1A0A5B0 115 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 FFAR3O14843 346 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 MAFKO60675 156 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 TRIM13O60858 407 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 LRG1P02750 347 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 AMY2AP04746 511 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 BMP7P18075 431 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 AMY2BP19961 511 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 TXNRD1Q16881 649 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 MTHFSDQ2M296 383 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 ZC3H18Q86VM9 953 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 NLGN1Q8N2Q7 840 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 IGSF22Q8N9C0 903 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 FBXW5Q969U6 566 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms