RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ATG2AQ2TAZ0 1938 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 A0A087WWV3 80 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 A0A087WZ62 844 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 POTEMA6NI47 508 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 YWHABP31946 246 aaKnown RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 BTG3Q14201 252 aaPredicted RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 SAFBQ15424 915 aaKnown RBP eCLIP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 ZNF174Q15697 407 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 PAN2Q504Q3 1202 aaKnown RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 CLP1Q92989 425 aaKnown RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 CEP170P1Q96L14 293 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 FDXACB1Q9BRP7 624 aaPredicted RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 DHX33Q9H6R0 707 aaKnown RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 SUCLA2Q9P2R7 463 aaPredicted RBP21.35■■□□□ 1.01
SF3A1-202ENST00000411423 HCSTQ9UBK5 93 aa21.35■■□□□ 1.01
SF3A1-202ENST00000411423 DENND3A2RUS2 1198 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 H3BNC9 293 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 ST18O60284 1047 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 FAM189BP81408 668 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 TFF2Q03403 129 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 GPM6BQ13491 265 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 FAM102BQ5T8I3 360 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 TPH2Q8IWU9 490 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 NLRP7Q8WX94 980 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 SAMD11Q96NU1 681 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 RNF19AQ9NV58 838 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 LMCD1Q9NZU5 365 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 THEGQ9P2T0 379 aa21.34■■□□□ 1.01
SF3A1-202ENST00000411423 FNDC1Q4ZHG4 1894 aaPredicted RBP21.33■■□□□ 1.01
SF3A1-202ENST00000411423 C5orf67F2Z3F1 127 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 CTNNB1P35222 781 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 BMPR1AP36894 532 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 TOB1P50616 345 aaPredicted RBP21.33■■□□□ 1.01
SF3A1-202ENST00000411423 SLC24A5Q71RS6 500 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 RHPN2Q8IUC4 686 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 NOSTRINQ8IVI9 506 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 CMTR2Q8IYT2 770 aaKnown RBP21.33■■□□□ 1.01
SF3A1-202ENST00000411423 C4orf32Q8N8J7 132 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 TMEM143Q96AN5 459 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 ZSWIM4Q9H7M6 989 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 XPNPEP1Q9NQW7 623 aa21.33■■□□□ 1.01
SF3A1-202ENST00000411423 STAG3L1P0CL83 205 aa21.32■■□□□ 1
SF3A1-202ENST00000411423 FGFR1P11362 822 aa21.32■■□□□ 1
SF3A1-202ENST00000411423 U2AF2P26368 475 aaKnown RBP eCLIP21.32■■□□□ 14e-7■■□□□ 12
SF3A1-202ENST00000411423 TTC38Q5R3I4 469 aa21.32■■□□□ 1
SF3A1-202ENST00000411423 UPF2Q9HAU5 1272 aaKnown RBP21.32■■□□□ 1
SF3A1-202ENST00000411423 C1orf112Q9NSG2 853 aa21.32■■□□□ 1
SF3A1-202ENST00000411423 GRM6O15303 877 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 DKC1O60832 514 aaKnown RBP eCLIP21.31■■□□□ 1
SF3A1-202ENST00000411423 LYPLA2O95372 231 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 SPATA31C1P0DKV0 1188 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 SKIV2LQ15477 1246 aaKnown RBP21.31■■□□□ 1
SF3A1-202ENST00000411423 XKR9Q5GH70 373 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 ODR4Q5SWX8 454 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 MRPL38Q96DV4 380 aaKnown RBP21.31■■□□□ 1
SF3A1-202ENST00000411423 NLRP4Q96MN2 994 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 SCLT1Q96NL6 688 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 IFT122Q9HBG6 1241 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 LRFN2Q9ULH4 789 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 PCDHB7Q9Y5E2 793 aa21.31■■□□□ 1
SF3A1-202ENST00000411423 MED24O75448 989 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 ATF7P17544 494 aaPredicted RBP21.3■■□□□ 1
SF3A1-202ENST00000411423 TECP42680 631 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 POLGP54098 1239 aaPredicted RBP21.3■■□□□ 1
SF3A1-202ENST00000411423 EMC2Q15006 297 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 ZNF710Q8N1W2 664 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 PIGOQ8TEQ8 1089 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 ATXN2LQ8WWM7 1075 aaKnown RBP21.3■■□□□ 1
SF3A1-202ENST00000411423 ASB2Q96Q27 587 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 GCOM2Q9BZD3 368 aaPredicted RBP21.3■■□□□ 1
SF3A1-202ENST00000411423 MINDY3Q9H8M7 445 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 PCDHB6Q9Y5E3 794 aa21.3■■□□□ 1
SF3A1-202ENST00000411423 TBKBP1A7MCY6 615 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 OR52Z1P0C646 297 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 DNAJB1P25685 340 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 GJB2P29033 226 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 RFC5P40937 340 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 DNM2P50570 870 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 CAMK1Q14012 370 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 TJAP1Q5JTD0 557 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 ZNF410Q86VK4 478 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 ECHDC2Q86YB7 292 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 PRPF31Q8WWY3 499 aaKnown RBP21.29■■□□□ 1
SF3A1-202ENST00000411423 SLC7A3Q8WY07 619 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 ELAC1Q9H777 363 aaKnown RBP21.29■■□□□ 1
SF3A1-202ENST00000411423 TMEM161AQ9NX61 479 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 COL4A3BPQ9Y5P4 624 aa21.29■■□□□ 1
SF3A1-202ENST00000411423 RB1P06400 928 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 RARRES1P49788 294 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 KCNQ1P51787 676 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 LAMTOR4Q0VGL1 99 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 LRRC55Q6ZSA7 311 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 OTUD6AQ7L8S5 288 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 ZNF598Q86UK7 904 aaKnown RBP21.28■■□□□ 1
SF3A1-202ENST00000411423 CATSPER3Q86XQ3 398 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 NEK9Q8TD19 979 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 CASD1Q96PB1 797 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 JPH2Q9BR39 696 aaPredicted RBP21.28■■□□□ 1
SF3A1-202ENST00000411423 BACH2Q9BYV9 841 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 CWH43Q9H720 699 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms