RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 PALD1Q9ULE6 856 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 ZNF608Q9ULD9 1512 aaPredicted RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 ASCC3Q8N3C0 2202 aaKnown RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 ZNF197O14709 1029 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 ZBTB5O15062 677 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 ARIH2O95376 493 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 TMEM60Q9H2L4 133 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 PLEKHA4Q9H4M7 779 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 USP17L8P0C7I0 530 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 CD58P19256 250 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 EML4Q9HC35 981 aaKnown RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 HACD3Q9P035 362 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 CDK17Q00537 523 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 USPL1Q5W0Q7 1092 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 HEATR6Q6AI08 1181 aaKnown RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 ING2Q9H160 280 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 DDX56Q9NY93 547 aaKnown RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 SLC26A4O43511 780 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 HUS1O60921 280 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 KRT76Q01546 638 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 CAPRIN1Q14444 709 aaKnown RBP10.32□□□□□ -0.76
CUX1-203ENST00000360264 KCTD1Q719H9 257 aa10.32□□□□□ -0.76
CUX1-203ENST00000360264 ARHGAP10A1A4S6 786 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GADD45BO75293 160 aaPredicted RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 ADORA1P30542 326 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 MEI1Q5TIA1 1274 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SHROOM2Q13796 1616 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GTPBP10A4D1E9 387 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 IQCA1LA6NCM1 817 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 STXBP3O00186 592 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 TRPA1O75762 1119 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 ZC3H12BQ5HYM0 836 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 USP17L2Q6R6M4 530 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 TDRD7Q8NHU6 1098 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 NSUN6Q8TEA1 469 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 DCUN1D1Q96GG9 259 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SPATS2LQ9NUQ6 558 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 EHD2Q9NZN4 543 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 ATP7BP35670 1465 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 UBE4BO95155 1302 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 EFNA5P52803 228 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GRAMD1BQ3KR37 738 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 MMS22LQ6ZRQ5 1243 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 DGKHQ86XP1 1220 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CMTR1Q8N1G2 835 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 COPG1Q9Y678 874 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 RAD17O75943 681 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 NCF2P19878 526 aaPredicted RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 SNX17Q15036 470 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CCDC24Q8N4L8 307 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 TMEM35BQ8NCS4 154 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CLIC6Q96NY7 704 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 APOL1O14791 398 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CLDN3O15551 220 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CCNE1P24864 410 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 HDAC4P56524 1084 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 MDM2Q00987 491 aaPredicted RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 MTMR1Q13613 665 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 PTPROQ16827 1216 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 PHF21AQ96BD5 680 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 ZWILCHQ9H900 591 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 BTBD18B2RXH4 712 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 IL10P22301 178 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 PTH1RQ03431 593 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SF3A3Q12874 501 aaKnown RBP eCLIP10.31□□□□□ -0.76
CUX1-203ENST00000360264 MAPRE2Q15555 327 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GPIHBP1Q8IV16 184 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SDC4P31431 198 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 MIGA2Q7L4E1 593 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 KIAA0100Q14667 2235 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 AATKQ6ZMQ8 1374 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 TTLL4Q14679 1199 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SLC35F6Q8N357 371 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 NUP85Q9BW27 656 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 BCL2L12Q9HB09 334 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 CAPN11Q9UMQ6 739 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SCP2P22307 547 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GRAPQ13588 217 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 GRAPLQ8TC17 118 aaPredicted RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 ARHGEF1Q92888 912 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 PCDHA5Q9Y5H7 936 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 KIF28PB7ZC32 967 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 PADI6Q6TGC4 694 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 TMEM270Q6UE05 265 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 ZRANB2O95218 330 aaKnown RBP eCLIP10.31□□□□□ -0.76
CUX1-203ENST00000360264 NR1D1P20393 614 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 ORAI2Q96SN7 254 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 PIDD1Q9HB75 910 aa10.31□□□□□ -0.76
CUX1-203ENST00000360264 SRPRBQ9Y5M8 271 aaKnown RBP10.31□□□□□ -0.76
CUX1-203ENST00000360264 ADGRL3Q9HAR2 1447 aa10.3□□□□□ -0.76
CUX1-203ENST00000360264 ESRRAP11474 423 aaPredicted RBP10.3□□□□□ -0.76
CUX1-203ENST00000360264 CDC26Q8NHZ8 85 aa10.3□□□□□ -0.76
CUX1-203ENST00000360264 SLC38A7Q9NVC3 462 aa10.3□□□□□ -0.76
CUX1-203ENST00000360264 FNDC3AQ9Y2H6 1198 aaKnown RBP10.3□□□□□ -0.76
CUX1-203ENST00000360264 CHUKO15111 745 aa10.3□□□□□ -0.76
CUX1-203ENST00000360264 HSPA1AP0DMV8 641 aaKnown RBP10.3□□□□□ -0.76
CUX1-203ENST00000360264 HSPA1BP0DMV9 641 aaKnown RBP10.3□□□□□ -0.76
CUX1-203ENST00000360264 TRADDQ15628 312 aa10.3□□□□□ -0.76
CUX1-203ENST00000360264 TEKT4Q8WW24 435 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms