RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 TCF12Q99081 682 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 MTIF3Q9H2K0 278 aaKnown RBP8.08□□□□□ -1.12
VPS13A-201ENST00000355766 MROH8Q9H579 483 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 GOLGA2P5Q9HBQ8 144 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 LRP2BPQ9P2M1 347 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 SAP30BPQ9UHR5 308 aaKnown RBP8.08□□□□□ -1.12
VPS13A-201ENST00000355766 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-201ENST00000355766 FOCADQ5VW36 1801 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 FOXP2O15409 715 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 ICMTO60725 284 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 ACRP10323 421 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 MRE11P49959 708 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 RCAN1P53805 252 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 EVCP57679 992 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 ECM1Q16610 540 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 PAOXQ6QHF9 649 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 ADGRA1Q86SQ6 560 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 MAGEB6Q8N7X4 407 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 MB21D1Q8N884 522 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 GIMAP7Q8NHV1 300 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 UPF3BQ9BZI7 483 aaKnown RBP8.07□□□□□ -1.12
VPS13A-201ENST00000355766 PUS7LQ9H0K6 701 aaKnown RBP8.07□□□□□ -1.12
VPS13A-201ENST00000355766 EHD4Q9H223 541 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 CLEC4MQ9H2X3 399 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-201ENST00000355766 RNF41Q9H4P4 317 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-201ENST00000355766 CNNM2Q9H8M5 875 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 LIN7BQ9HAP6 207 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 IL23AQ9NPF7 189 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 PDRG1Q9NUG6 133 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 COG5Q9UP83 839 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 REV3LO60673 3130 aa8.07□□□□□ -1.12
VPS13A-201ENST00000355766 PATL2C9JE40 543 aaKnown RBP8.06□□□□□ -1.12
VPS13A-201ENST00000355766 FGAP02671 866 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 CTSBP07858 339 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 ZNF865P0CJ78 1059 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-201ENST00000355766 FCER1AP12319 257 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 CST5P28325 142 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-201ENST00000355766 AK2P54819 239 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 TRDNQ13061 729 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 COG2Q14746 738 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 ABCB5Q2M3G0 1257 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 CCSAPQ6IQ19 270 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-201ENST00000355766 KLHDC9Q8NEP7 349 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 GLT1D1Q96MS3 346 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 SEC62Q99442 399 aaKnown RBP8.06□□□□□ -1.12
VPS13A-201ENST00000355766 TINF2Q9BSI4 451 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 OSBPL1AQ9BXW6 950 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 TANGO6Q9C0B7 1094 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 HOXC10Q9NYD6 342 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 EGFL7Q9UHF1 273 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 SERPINB13Q9UIV8 391 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 ANAPC4Q9UJX5 808 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 PLXNA1Q9UIW2 1896 aa8.06□□□□□ -1.12
VPS13A-201ENST00000355766 MUC6Q6W4X9 2439 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ELP1O95163 1332 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 A0A0U1RQG5 324 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 MYADML2A6NDP7 307 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 PRR33A8MZF0 331 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ZNF213O14771 459 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 TLR3O15455 904 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 EIF4EBP3O60516 100 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 MBD4O95243 580 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 POU3F3P20264 500 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 PDCP20941 246 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 MAOBP27338 520 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 GUCY1A2P33402 732 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 MCM5P33992 734 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ADMP35318 185 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 CDK7P50613 346 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 EXOSC10Q01780 885 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 PLS1Q14651 629 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 KCNA10Q16322 511 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ADCK5Q3MIX3 580 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 CERKLQ49MI3 558 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 RALYLQ86SE5 291 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 FAM126BQ8IXS8 530 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 NCOA7Q8NI08 942 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ATG4CQ96DT6 458 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 GBP4Q96PP9 640 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 RIOK1Q9BRS2 568 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 LLPHQ9BRT6 129 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 KRT23Q9C075 422 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 NAPBQ9H115 298 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 CABP5Q9NP86 173 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 ATP8A2Q9NTI2 1148 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 CNPY2Q9Y2B0 182 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 DIS3Q9Y2L1 958 aaKnown RBP8.05□□□□□ -1.12
VPS13A-201ENST00000355766 KIF3AQ9Y496 699 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 PCDHA11Q9Y5I1 949 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 MTCH2Q9Y6C9 303 aa8.05□□□□□ -1.12
VPS13A-201ENST00000355766 CDK5RAP2Q96SN8 1893 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 A0A1W2PRG0 241 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 E7EWF7 191 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 PI4K2BG5E9Z4 385 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 SMIM22K7EJ46 135 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 ARVCFO00192 962 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 DHX16O60231 1041 aaKnown RBP8.04□□□□□ -1.12
VPS13A-201ENST00000355766 SLC25A27O95847 323 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 FGBP02675 491 aa8.04□□□□□ -1.12
VPS13A-201ENST00000355766 PGK2P07205 417 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms