RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HUS1O60921 280 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 TADA3O75528 432 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 PALMO75781 387 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 CIAO1O76071 339 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 HSPA8P11142 646 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 SLC10A5Q5PT55 438 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 RGS9BPQ6ZS82 235 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 SLC26A7Q8TE54 656 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 ASIC4Q96FT7 647 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 WRNIP1Q96S55 665 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 SCOCQ9UIL1 159 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 ANKRD65E5RJM6 399 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 DFFAO00273 331 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 BBOX1O75936 387 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 GPC3P51654 580 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 RC3H1Q5TC82 1133 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 SNRNP48Q6IEG0 339 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 CYFIP1Q7L576 1253 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 RMDN3Q96TC7 470 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 PLAAQ9Y263 795 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 NMT2O60551 498 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 DNAJC6O75061 913 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 TJP3O95049 919 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 DHX36Q9H2U1 1008 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 NDUFA10O95299 355 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 SLFN14P0C7P3 912 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 ZNF211Q13398 564 aaPredicted RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 USP6NLQ92738 828 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 PARD6BQ9BYG5 372 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 TRIM15Q9C019 465 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 ATP6V0A4Q9HBG4 840 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 TMEM260Q9NX78 707 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 CNOT8Q9UFF9 292 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 CLCA2Q9UQC9 943 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 LARGE1O95461 756 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ARMCX6Q7L4S7 300 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 CEP70Q8NHQ1 597 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 THAP9Q9H5L6 903 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 TRPC7Q9HCX4 862 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SSH2Q76I76 1423 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SPAG7O75391 227 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 MMP10P09238 476 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 IL6STP40189 918 aaPredicted RBP13.47□□□□□ -0.25
SDC3-201ENST00000336798 ZNF746Q6NUN9 644 aaPredicted RBP13.47□□□□□ -0.25
SDC3-201ENST00000336798 URGCPQ8TCY9 931 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 CCHCR1Q8TD31 782 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ANGPTL2Q9UKU9 493 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 A0A1W2PQ27 194 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 A0A1W2PQ64 194 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 A0A1W2PQD8 194 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L15C9J2P7 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L13C9JLJ4 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L11C9JVI0 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L18D6R9N7 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L22D6RA61 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L17D6RBQ6 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L19D6RCP7 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L20D6RJB6 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 NR1D1P20393 614 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 MAGEA9P43362 315 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L24Q0WX57 530 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 USP17L6PQ6QN14 398 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ARHGEF1Q92888 912 aaKnown RBP13.47□□□□□ -0.25
SDC3-201ENST00000336798 SLC13A1Q9BZW2 595 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SP110Q9HB58 689 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ABCC10Q5T3U5 1492 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 F8W8V4 182 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 LCP1P13796 627 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 GFPT1Q06210 699 aaPredicted RBP13.47□□□□□ -0.25
SDC3-201ENST00000336798 SURF1Q15526 300 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SUSD4Q5VX71 490 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 HIBCHQ6NVY1 386 aaPredicted RBP13.47□□□□□ -0.25
SDC3-201ENST00000336798 CATSPER3Q86XQ3 398 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 MB21D1Q8N884 522 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 C11orf70Q9BRQ4 267 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 FGFR1OP2Q9NVK5 253 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SCINQ9Y6U3 715 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 UBE4BO95155 1302 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 IFNA8P32881 189 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 LRRC31Q6UY01 552 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 SFR1Q86XK3 245 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 KCNV2Q8TDN2 545 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 FAM81BQ96LP2 452 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ZC4H2Q9NQZ6 224 aa13.47□□□□□ -0.25
SDC3-201ENST00000336798 ZBTB7AO95365 584 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 CPB1P15086 417 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 STXBP2Q15833 593 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 ALKBH5Q6P6C2 394 aaKnown RBP13.46□□□□□ -0.25
SDC3-201ENST00000336798 DDX53Q86TM3 631 aaKnown RBP13.46□□□□□ -0.25
SDC3-201ENST00000336798 FAM160B2Q86V87 743 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 NLRP10Q86W26 655 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 GAS2L3Q86XJ1 694 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 SYT2Q8N9I0 419 aaPredicted RBP13.46□□□□□ -0.25
SDC3-201ENST00000336798 LINC00301Q8NCQ3 95 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 NRBF2Q96F24 287 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 CXorf56Q9H5V9 222 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 PNMA3Q9UL41 463 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 STAT3P40763 770 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 CRKP46108 304 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 ERFP50548 548 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms