RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 HCSTQ9UBK5 93 aa16.19■□□□□ 0.18
HMGN3-201ENST00000275036 MARCH6O60337 910 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 P4HBP07237 508 aaKnown RBP16.18■□□□□ 0.18
HMGN3-201ENST00000275036 DNAJB1P25685 340 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 TMOD1P28289 359 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 SARSP49591 514 aaKnown RBP16.18■□□□□ 0.18
HMGN3-201ENST00000275036 NPEPPSP55786 919 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 HMGN5P82970 282 aaKnown RBP16.18■□□□□ 0.18
HMGN3-201ENST00000275036 CAMK1Q14012 370 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 EPHA7Q15375 998 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 CALCRLQ16602 461 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 TCEAL5Q5H9L2 206 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 SLFN12Q8IYM2 578 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 FBXO18Q8NFZ0 1043 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 DYDC2Q96IM9 177 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 MTMR9Q96QG7 549 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 LXNQ9BS40 222 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 TMEM60Q9H2L4 133 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 UBE2ZQ9H832 354 aaPredicted RBP16.18■□□□□ 0.18
HMGN3-201ENST00000275036 PLXNA4Q9HCM2 1894 aa16.18■□□□□ 0.18
HMGN3-201ENST00000275036 ZBTB39O15060 712 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 GPR182O15218 404 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 NEMFO60524 1076 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 MAFO75444 373 aaPredicted RBP16.17■□□□□ 0.18
HMGN3-201ENST00000275036 CSPG5O95196 566 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 BAG4O95429 457 aaKnown RBP16.17■□□□□ 0.18
HMGN3-201ENST00000275036 ATP2B1P20020 1258 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 FGFR4P22455 802 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 CYP4A11Q02928 519 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 CTTNQ14247 550 aaKnown RBP16.17■□□□□ 0.18
HMGN3-201ENST00000275036 SAFBQ15424 915 aaKnown RBP eCLIP16.17■□□□□ 0.18
HMGN3-201ENST00000275036 PTPROQ16827 1216 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 FAM102BQ5T8I3 360 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 TBC1D32Q96NH3 1257 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 ALG13Q9NP73 1137 aaKnown RBP16.17■□□□□ 0.18
HMGN3-201ENST00000275036 CYP26B1Q9NR63 512 aa16.17■□□□□ 0.18
HMGN3-201ENST00000275036 DENND3A2RUS2 1198 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 CSDE1O75534 798 aaKnown RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 ITGB1P05556 798 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 RB1P06400 928 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 STAG3L1P0CL83 205 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 FGFR1P11362 822 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 EIF4BP23588 611 aaKnown RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 TXKP42681 527 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 FAM189BP81408 668 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 COL19A1Q14993 1142 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 AAK1Q2M2I8 961 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 TIGD5Q53EQ6 642 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 SLC24A5Q71RS6 500 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 C4orf19Q8IY42 314 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 FAM184AQ8NB25 1140 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 EIF2AK1Q9BQI3 630 aaKnown RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 C11orf84Q9BUA3 381 aaPredicted RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 FOXP1Q9H334 677 aaPredicted RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 NSUN3Q9H649 340 aaKnown RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 TTC12Q9H892 705 aaPredicted RBP16.16■□□□□ 0.18
HMGN3-201ENST00000275036 RNF19AQ9NV58 838 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 PCDHA12Q9UN75 941 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 PLAGL2Q9UPG8 496 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 RWDD3Q9Y3V2 267 aa16.16■□□□□ 0.18
HMGN3-201ENST00000275036 C5orf42Q9H799 3197 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 ST18O60284 1047 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 SLITRK3O94933 977 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 DARSP14868 501 aaKnown RBP16.15■□□□□ 0.18
HMGN3-201ENST00000275036 KCNA5P22460 613 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 YWHABP31946 246 aaKnown RBP16.15■□□□□ 0.18
HMGN3-201ENST00000275036 MCM7P33993 719 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 ODR4Q5SWX8 454 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 KSR1Q8IVT5 923 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 IL27Q8NEV9 243 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.15■□□□□ 0.18
HMGN3-201ENST00000275036 NLRP7Q8WX94 980 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 TMX3Q96JJ7 454 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 CEP170P1Q96L14 293 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 HSD17B14Q9BPX1 270 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 C1orf112Q9NSG2 853 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 SUCLA2Q9P2R7 463 aaPredicted RBP16.15■□□□□ 0.18
HMGN3-201ENST00000275036 LRFN2Q9ULH4 789 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 PCDHB7Q9Y5E2 793 aa16.15■□□□□ 0.18
HMGN3-201ENST00000275036 A0A087WZ62 844 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 POTEMA6NI47 508 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 TBKBP1A7MCY6 615 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 DKC1O60832 514 aaKnown RBP eCLIP16.14■□□□□ 0.17
HMGN3-201ENST00000275036 GTF2F1P35269 517 aaKnown RBP eCLIP16.14■□□□□ 0.17
HMGN3-201ENST00000275036 IRS1P35568 1242 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 NBR1Q14596 966 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 ZNF174Q15697 407 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 LEXMQ3ZCV2 418 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 NOSTRINQ8IVI9 506 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 TPH2Q8IWU9 490 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 ZNF710Q8N1W2 664 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 KLHL23Q8NBE8 558 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 SPPL3Q8TCT6 385 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 NEK9Q8TD19 979 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 P2RX5Q93086 422 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 FDXACB1Q9BRP7 624 aaPredicted RBP16.14■□□□□ 0.17
HMGN3-201ENST00000275036 PLVAPQ9BX97 442 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 DHX33Q9H6R0 707 aaKnown RBP16.14■□□□□ 0.17
HMGN3-201ENST00000275036 ZSWIM4Q9H7M6 989 aa16.14■□□□□ 0.17
HMGN3-201ENST00000275036 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms