RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NEK9Q8TD19 979 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 P2RX5Q93086 422 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 PABPC5Q96DU9 382 aaKnown RBP10.97□□□□□ -0.65
VPS41-201ENST00000265745 PPP1R16BQ96T49 567 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 OSMRQ99650 979 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 PHF20Q9BVI0 1012 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 TEKT3Q9BXF9 490 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 SLKQ9H2G2 1235 aaPredicted RBP10.97□□□□□ -0.65
VPS41-201ENST00000265745 ADAMTS10Q9H324 1103 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 C1orf112Q9NSG2 853 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 KCNJ14Q9UNX9 436 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 PCDHB7Q9Y5E2 793 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 BDP1A6H8Y1 2624 aa10.97□□□□□ -0.65
VPS41-201ENST00000265745 REV3LO60673 3130 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 COL4A6Q14031 1691 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 DENND3A2RUS2 1198 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 NCK2O43639 380 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 CDKL5O76039 1030 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 STBD1O95210 358 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 EIF4BP23588 611 aaKnown RBP10.96□□□□□ -0.65
VPS41-201ENST00000265745 TMOD1P28289 359 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 GATMP50440 423 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 NLRP11P59045 1033 aaKnown RBP10.96□□□□□ -0.65
VPS41-201ENST00000265745 DSC3Q14574 896 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 NONOQ15233 471 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS41-201ENST00000265745 TARBP2Q15633 366 aaKnown RBP10.96□□□□□ -0.65
VPS41-201ENST00000265745 INF2Q27J81 1249 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 CTC1Q2NKJ3 1217 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 NAALADL2Q58DX5 795 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 MIER3Q7Z3K6 550 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 KRT25Q7Z3Z0 450 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 FAM228AQ86W67 206 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 SPPL3Q8TCT6 385 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 CEP89Q96ST8 783 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 MAP7D2Q96T17 732 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 NIFKQ9BYG3 293 aaKnown RBP10.96□□□□□ -0.65
VPS41-201ENST00000265745 ALG13Q9NP73 1137 aaKnown RBP10.96□□□□□ -0.65
VPS41-201ENST00000265745 LRFN2Q9ULH4 789 aa10.96□□□□□ -0.65
VPS41-201ENST00000265745 H3BQ06 376 aaPredicted RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 SLC37A4O43826 429 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 DTNBO60941 627 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 CTDNEP1O95476 244 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 MMP1P03956 469 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 ITGB1P05556 798 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 LTBRP36941 435 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 TBC1D8BQ0IIM8 1120 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 HYAL1Q12794 435 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 ANKRD1Q15327 319 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 PUS10Q3MIT2 529 aaKnown RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 PAN2Q504Q3 1202 aaKnown RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 XKR3Q5GH77 459 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 FAM102BQ5T8I3 360 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 PTCRAQ6ISU1 281 aaPredicted RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 FAM178BQ8IXR5 827 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 LRRC71Q8N4P6 559 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 KLHL23Q8NBE8 558 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 ELAC1Q9H777 363 aaKnown RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 CD320Q9NPF0 282 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 GJB4Q9NTQ9 266 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 DDX25Q9UHL0 483 aaKnown RBP10.95□□□□□ -0.66
VPS41-201ENST00000265745 AKT3Q9Y243 479 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 PTPRSQ13332 1948 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 BRWD1Q9NSI6 2320 aa10.95□□□□□ -0.66
VPS41-201ENST00000265745 DOCK5Q9H7D0 1870 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 STK36Q9NRP7 1315 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 IGKV6-21A0A0C4DH24 114 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 CCDC194A0A1B0GVG4 234 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 TBKBP1A7MCY6 615 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 SEC24BO95487 1268 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 DARSP14868 501 aaKnown RBP10.94□□□□□ -0.66
VPS41-201ENST00000265745 XBP1P17861 261 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 IBSPP21815 317 aaPredicted RBP10.94□□□□□ -0.66
VPS41-201ENST00000265745 DNAJB1P25685 340 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 GPC3P51654 580 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 AK2P54819 239 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 DRP2Q13474 957 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 LETM2Q2VYF4 491 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 PPP4R3AQ6IN85 833 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 FAM20AQ96MK3 541 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 C1QTNF1Q9BXJ1 281 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 EPHX3Q9H6B9 360 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 ATP6V0A4Q9HBG4 840 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 KCNMB3Q9NPA1 279 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 TMEM161AQ9NX61 479 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 CLDND1Q9NY35 253 aa10.94□□□□□ -0.66
VPS41-201ENST00000265745 ORC3Q9UBD5 711 aaPredicted RBP10.94□□□□□ -0.66
VPS41-201ENST00000265745 TTC3P53804 2025 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 MICAL3Q7RTP6 2002 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 TMEM150BA6NC51 233 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 DDX11L8A8MPP1 907 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 EML1O00423 815 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 FGFR1P11362 822 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 FDPSP14324 419 aaKnown RBP10.93□□□□□ -0.66
VPS41-201ENST00000265745 IL9P15248 144 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 GCFC2P16383 781 aaKnown RBP10.93□□□□□ -0.66
VPS41-201ENST00000265745 ZSCAN20P17040 1043 aaPredicted RBP10.93□□□□□ -0.66
VPS41-201ENST00000265745 GTF2F1P35269 517 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS41-201ENST00000265745 PSMC5P62195 406 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 CDC42EP1Q00587 391 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 DLX2Q07687 328 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms